Variant report

Variant	rs7532729
Chromosome Location	chr1:86086459-86086460
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12746474	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34254668	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34315594	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs34435863	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34804563	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35022391	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35398538	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6675729	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6681351	1.00[GIH][hapmap];0.84[TSI][hapmap]
rs71654715	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71654716	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71654717	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7551256	1.00[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006994	chr1:85454304-86327679	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	esv3391173	chr1:86005637-86337469	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv1000290	chr1:86078495-86105379	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:86079200-86087800	Weak transcription	Left Ventricle	heart
2	chr1:86079200-86094400	Weak transcription	Pancreas	Pancrea
3	chr1:86082200-86086800	Weak transcription	Fetal Heart	heart
4	chr1:86082200-86086800	Weak transcription	Fetal Intestine Small	intestine
5	chr1:86082200-86087600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:86082400-86086800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:86082400-86087200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr1:86083200-86086600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr1:86083400-86086800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:86083800-86095200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:86083800-86103200	Weak transcription	Brain Cingulate Gyrus	brain
12	chr1:86084000-86086800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr1:86084000-86086800	Weak transcription	HSMM	muscle
14	chr1:86084000-86087000	Weak transcription	NH-A	brain
15	chr1:86084200-86086800	Weak transcription	NHDF-Ad	bronchial
16	chr1:86084400-86087800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr1:86084600-86092800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr1:86085400-86086600	Weak transcription	Psoas Muscle	Psoas
19	chr1:86085800-86093200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr1:86086200-86088600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:86086200-86088800	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr1:86086400-86087000	ZNF genes & repeats	Brain Substantia Nigra	brain
23	chr1:86086400-86088200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:86086400-86088400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:86086400-86088600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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