Variant report

Variant	rs7532731
Chromosome Location	chr1:93282415-93282416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:93282322..93284805-chr1:93286517..93288170,2	K562	blood:
2	chr1:93277281..93280109-chr1:93281216..93283835,2	MCF-7	breast:
3	chr1:93243993..93246087-chr1:93282223..93283796,2	K562	blood:

Extended variants
information (count: 197 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:195)

rs_ID	r²[population]
rs1017008	0.83[EUR][1000 genomes]
rs10218567	0.83[EUR][1000 genomes]
rs10218670	0.83[EUR][1000 genomes]
rs10735782	0.82[EUR][1000 genomes]
rs10735783	0.86[EUR][1000 genomes]
rs10735784	0.86[EUR][1000 genomes]
rs10747445	0.82[EUR][1000 genomes]
rs10747447	0.82[EUR][1000 genomes]
rs10747448	0.82[EUR][1000 genomes]
rs10747449	0.82[EUR][1000 genomes]
rs10747450	0.82[EUR][1000 genomes]
rs10747451	0.83[EUR][1000 genomes]
rs10747452	0.82[EUR][1000 genomes]
rs10782938	0.82[EUR][1000 genomes]
rs10782940	0.82[EUR][1000 genomes]
rs10782942	0.86[EUR][1000 genomes]
rs10782944	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874721	0.82[EUR][1000 genomes]
rs10874728	0.82[EUR][1000 genomes]
rs10874729	0.82[EUR][1000 genomes]
rs10874730	0.82[EUR][1000 genomes]
rs10874731	0.82[EUR][1000 genomes]
rs10874742	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11164790	0.81[EUR][1000 genomes]
rs11164799	0.85[EUR][1000 genomes]
rs11164804	0.86[EUR][1000 genomes]
rs11164805	0.86[EUR][1000 genomes]
rs11164806	0.84[EUR][1000 genomes]
rs11164808	0.86[EUR][1000 genomes]
rs11164809	0.86[EUR][1000 genomes]
rs11164812	0.89[EUR][1000 genomes]
rs11164813	0.89[EUR][1000 genomes]
rs11164821	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1182640	0.86[EUR][1000 genomes]
rs12029026	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12045019	0.82[EUR][1000 genomes]
rs1337108	0.86[EUR][1000 genomes]
rs1337109	0.86[EUR][1000 genomes]
rs1411706	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1415294	0.83[EUR][1000 genomes]
rs1415295	0.83[EUR][1000 genomes]
rs1467559	0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1537498	0.82[EUR][1000 genomes]
rs1538029	0.82[EUR][1000 genomes]
rs1610319	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1929138	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1932965	0.82[EUR][1000 genomes]
rs1932966	0.83[EUR][1000 genomes]
rs1932967	0.86[EUR][1000 genomes]
rs1977224	0.81[EUR][1000 genomes]
rs1977227	0.95[ASN][1000 genomes]
rs1977228	0.83[ASN][1000 genomes]
rs1977229	0.81[EUR][1000 genomes]
rs1999819	0.83[EUR][1000 genomes]
rs2025100	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2025101	0.86[EUR][1000 genomes]
rs2027059	0.82[EUR][1000 genomes]
rs2027060	0.82[EUR][1000 genomes]
rs2039451	0.82[EUR][1000 genomes]
rs2039452	0.81[EUR][1000 genomes]
rs2039453	0.82[EUR][1000 genomes]
rs2050597	0.82[EUR][1000 genomes]
rs2065916	0.83[EUR][1000 genomes]
rs2065917	0.83[EUR][1000 genomes]
rs2077529	0.85[EUR][1000 genomes]
rs2095265	0.82[EUR][1000 genomes]
rs2095266	0.82[EUR][1000 genomes]
rs2095268	0.82[EUR][1000 genomes]
rs2097838	0.83[EUR][1000 genomes]
rs2107520	0.86[EUR][1000 genomes]
rs2107521	0.86[EUR][1000 genomes]
rs2158446	0.86[EUR][1000 genomes]
rs2180977	0.86[EUR][1000 genomes]
rs2244005	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2244496	0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2244588	0.87[EUR][1000 genomes]
rs2298912	0.86[EUR][1000 genomes]
rs2391179	0.86[EUR][1000 genomes]
rs2391193	0.95[ASN][1000 genomes]
rs2391194	0.86[EUR][1000 genomes]
rs2391196	0.86[EUR][1000 genomes]
rs2391199	0.83[EUR][1000 genomes]
rs2391200	0.82[EUR][1000 genomes]
rs2391201	0.83[EUR][1000 genomes]
rs2774940	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2774941	0.83[EUR][1000 genomes]
rs2774943	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2774947	0.87[EUR][1000 genomes]
rs2811599	0.95[EUR][1000 genomes]
rs2811602	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2989014	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35054144	0.86[EUR][1000 genomes]
rs3790445	0.86[EUR][1000 genomes]
rs3790446	0.86[EUR][1000 genomes]
rs3898498	0.82[EUR][1000 genomes]
rs3898499	0.82[EUR][1000 genomes]
rs3936946	0.82[EUR][1000 genomes]
rs4000726	0.82[EUR][1000 genomes]
rs4000727	0.81[EUR][1000 genomes]
rs4120650	0.82[EUR][1000 genomes]
rs4240962	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4264007	0.86[EUR][1000 genomes]
rs4417075	0.82[EUR][1000 genomes]
rs4525050	0.86[EUR][1000 genomes]
rs4638137	0.86[EUR][1000 genomes]
rs4642893	0.81[EUR][1000 genomes]
rs4847217	0.86[EUR][1000 genomes]
rs4847221	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4847222	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4847232	0.82[EUR][1000 genomes]
rs4847234	0.82[EUR][1000 genomes]
rs4847247	0.82[EUR][1000 genomes]
rs4847266	0.83[EUR][1000 genomes]
rs4847285	0.86[EUR][1000 genomes]
rs4847304	0.86[EUR][1000 genomes]
rs4847309	0.86[EUR][1000 genomes]
rs4847310	0.86[EUR][1000 genomes]
rs4847327	0.82[EUR][1000 genomes]
rs4847363	0.86[EUR][1000 genomes]
rs4847370	0.89[EUR][1000 genomes]
rs4847400	0.82[EUR][1000 genomes]
rs4847427	0.82[EUR][1000 genomes]
rs6422515	0.82[EUR][1000 genomes]
rs6603993	0.82[EUR][1000 genomes]
rs6603994	0.82[EUR][1000 genomes]
rs6603999	0.82[EUR][1000 genomes]
rs6604000	0.82[EUR][1000 genomes]
rs6604003	0.83[EUR][1000 genomes]
rs6604004	0.83[EUR][1000 genomes]
rs6604006	0.81[EUR][1000 genomes]
rs6604010	0.86[EUR][1000 genomes]
rs6604012	0.86[EUR][1000 genomes]
rs6604015	0.86[EUR][1000 genomes]
rs6604018	0.86[EUR][1000 genomes]
rs6604022	0.86[EUR][1000 genomes]
rs6604025	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6659942	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660296	0.86[EUR][1000 genomes]
rs6661600	0.86[EUR][1000 genomes]
rs6665579	0.86[EUR][1000 genomes]
rs6669914	0.85[EUR][1000 genomes]
rs6671421	0.83[EUR][1000 genomes]
rs6675246	0.82[EUR][1000 genomes]
rs6676454	0.86[EUR][1000 genomes]
rs6679839	0.83[EUR][1000 genomes]
rs6685705	0.86[EUR][1000 genomes]
rs6687803	0.82[EUR][1000 genomes]
rs6687994	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6693371	0.89[EUR][1000 genomes]
rs6696636	0.81[EUR][1000 genomes]
rs6701130	0.82[EUR][1000 genomes]
rs723909	0.86[EUR][1000 genomes]
rs72728629	0.90[EUR][1000 genomes]
rs7416169	0.83[EUR][1000 genomes]
rs7513624	0.95[ASN][1000 genomes]
rs7513815	0.86[EUR][1000 genomes]
rs7514716	0.82[EUR][1000 genomes]
rs7515478	0.82[EUR][1000 genomes]
rs7521345	0.86[EUR][1000 genomes]
rs7526582	0.84[EUR][1000 genomes]
rs7527356	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7527835	0.83[EUR][1000 genomes]
rs7529332	0.82[EUR][1000 genomes]
rs7529630	0.82[EUR][1000 genomes]
rs7538520	0.82[EUR][1000 genomes]
rs7540407	0.82[EUR][1000 genomes]
rs7541829	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543077	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543112	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543327	0.86[EUR][1000 genomes]
rs7543964	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7545318	0.82[EUR][1000 genomes]
rs7549844	0.86[EUR][1000 genomes]
rs7551340	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7551880	0.89[EUR][1000 genomes]
rs7552085	0.86[EUR][1000 genomes]
rs7554183	0.82[EUR][1000 genomes]
rs7554868	0.86[EUR][1000 genomes]
rs7556243	0.82[EUR][1000 genomes]
rs757469	0.86[EUR][1000 genomes]
rs914064	0.83[EUR][1000 genomes]
rs927339	0.83[EUR][1000 genomes]
rs932637	0.83[EUR][1000 genomes]
rs9439917	0.82[EUR][1000 genomes]
rs9439920	0.86[EUR][1000 genomes]
rs9439924	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs945724	0.83[EUR][1000 genomes]
rs963043	0.82[EUR][1000 genomes]
rs963044	0.82[EUR][1000 genomes]
rs9633481	0.82[EUR][1000 genomes]
rs9662515	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9699810	0.81[EUR][1000 genomes]
rs976208	0.86[EUR][1000 genomes]
rs976209	0.86[EUR][1000 genomes]
rs980940	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv530047	chr1:93273425-93308213	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93274800-93283600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:93281200-93284000	Enhancers	Fetal Intestine Large	intestine
3	chr1:93281400-93284200	Enhancers	Fetal Intestine Small	intestine
4	chr1:93281800-93284000	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr1:93281800-93284000	Enhancers	Stomach Mucosa	stomach
6	chr1:93281800-93284200	Enhancers	HepG2	liver
7	chr1:93282000-93284200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr1:93282200-93283600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr1:93282400-93283000	Weak transcription	Colonic Mucosa	Colon
10	chr1:93282400-93283000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr1:93282400-93284000	Enhancers	Liver	Liver

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