Variant report

Variant	rs7533577
Chromosome Location	chr1:93469706-93469707
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10493864	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10493865	0.80[AMR][1000 genomes]
rs11164857	0.87[EUR][1000 genomes]
rs17131682	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17131685	0.80[AMR][1000 genomes]
rs17381426	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34073220	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35605531	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs71652517	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7533572	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
2	nsv830614	chr1:93465978-93678700	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93467000-93470200	Weak transcription	GM12878-XiMat	blood
2	chr1:93467000-93474600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:93469600-93472000	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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