Variant report

Variant	rs7533858
Chromosome Location	chr1:220884586-220884587
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:220444386..220446640-chr1:220883296..220885894,2	K562	blood:

Variant related genes	Relation type
ENSG00000118873	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11553965	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11553966	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17007981	0.82[JPT][hapmap]
rs17008285	1.00[JPT][hapmap]
rs17008287	1.00[JPT][hapmap]
rs17008290	1.00[JPT][hapmap]
rs17008302	1.00[JPT][hapmap]
rs17008319	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs17008339	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1874119	1.00[JPT][hapmap]
rs1874120	1.00[JPT][hapmap]
rs2088044	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2101771	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2172704	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3737297	0.85[JPT][hapmap]
rs3738175	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58055537	0.94[EUR][1000 genomes]
rs6663028	1.00[JPT][hapmap]
rs6673650	0.94[EUR][1000 genomes]
rs6675112	1.00[JPT][hapmap]
rs6675203	1.00[JPT][hapmap]
rs6678186	1.00[JPT][hapmap]
rs72472365	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73107682	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv468194	chr1:220845610-220885612	Bivalent Enhancer Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv549227	chr1:220845610-220885612	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2754270	chr1:220850116-220929155	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7533858	C1orf115	Cis_1M	lymphoblastoid	RTeQTL
rs7533858	MOSC2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220878400-220885200	Enhancers	Duodenum Mucosa	Duodenum
2	chr1:220878400-220886000	Enhancers	HepG2	liver
3	chr1:220878800-220885200	Enhancers	Pancreas	Pancrea
4	chr1:220881600-220885200	Enhancers	Primary B cells from cord blood	blood
5	chr1:220881600-220885200	Enhancers	Liver	Liver
6	chr1:220881600-220885400	Enhancers	Primary B cells from peripheral blood	blood
7	chr1:220882400-220885000	Enhancers	Right Ventricle	heart
8	chr1:220882600-220884800	Enhancers	Right Atrium	heart
9	chr1:220882600-220884800	Enhancers	Spleen	Spleen
10	chr1:220882800-220884600	Weak transcription	Fetal Lung	lung
11	chr1:220882800-220885200	Enhancers	Left Ventricle	heart
12	chr1:220883000-220884800	Enhancers	Ovary	ovary
13	chr1:220883400-220884600	Weak transcription	Fetal Intestine Large	intestine
14	chr1:220883400-220884800	Enhancers	Fetal Muscle Trunk	muscle
15	chr1:220883400-220885200	Enhancers	Adipose Nuclei	Adipose
16	chr1:220883600-220884600	Weak transcription	Gastric	stomach
17	chr1:220883600-220885200	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr1:220883600-220885400	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr1:220883800-220885200	Enhancers	GM12878-XiMat	blood
20	chr1:220883800-220886800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr1:220884200-220885400	Enhancers	Fetal Intestine Small	intestine
22	chr1:220884400-220884800	Enhancers	Lung	lung
23	chr1:220884400-220884800	Enhancers	Small Intestine	intestine
24	chr1:220884400-220885000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr1:220884400-220885200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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