Variant report

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12133319	0.81[CHB][hapmap];0.80[JPT][hapmap];0.87[AFR][1000 genomes]
rs3935665	0.89[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs4282879	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6540615	0.80[CHB][hapmap]
rs7547973	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv522480	chr1:210779936-210848344	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases
3	esv1825229	chr1:210789477-210854976	Enhancers ZNF genes & repeats Weak transcription Genic enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA miRNA target site	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210790600-210807000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210795400-210822600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr1:210795800-210806600	Weak transcription	Primary hematopoietic stem cells	blood
4	chr1:210798600-210806200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr1:210799000-210804600	Weak transcription	Brain Angular Gyrus	brain
6	chr1:210799000-210804600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr1:210799200-210805000	Weak transcription	Brain Anterior Caudate	brain
8	chr1:210799200-210807000	Weak transcription	HSMM	muscle
9	chr1:210799400-210802600	Weak transcription	Brain Substantia Nigra	brain
10	chr1:210800200-210802000	Enhancers	Right Ventricle	heart
11	chr1:210800800-210802000	Enhancers	Colon Smooth Muscle	Colon
12	chr1:210800800-210802000	Enhancers	A549	lung
13	chr1:210801000-210806600	Weak transcription	Right Atrium	heart
14	chr1:210801200-210802000	Enhancers	Brain Hippocampus Middle	brain
15	chr1:210801400-210802000	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr1:210801600-210802000	Enhancers	HSMMtube	muscle
17	chr1:210801600-210823000	Weak transcription	Aorta	Aorta
18	chr1:210801800-210802000	Enhancers	Ovary	ovary
19	chr1:210801800-210802000	Enhancers	Pancreas	Pancrea
20	chr1:210801800-210802600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr1:210801800-210804000	Weak transcription	Left Ventricle	heart

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