Variant report

Variant	rs7534106
Chromosome Location	chr1:58215034-58215035
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10493232	0.91[GIH][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap]
rs11577095	0.93[MEX][hapmap]
rs1323822	0.91[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap]
rs1323823	0.91[GIH][hapmap];0.86[MEX][hapmap];0.86[TSI][hapmap]
rs1408139	0.91[GIH][hapmap];0.80[MEX][hapmap];0.86[TSI][hapmap]
rs3118041	0.83[CHB][hapmap]
rs3118043	0.83[CHB][hapmap]
rs3118045	0.83[CHB][hapmap];0.81[CHD][hapmap]
rs3131729	0.83[CHD][hapmap];0.90[TSI][hapmap]
rs4912173	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58210600-58215400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:58213600-58215800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:58213800-58215200	Enhancers	Brain Germinal Matrix	brain
4	chr1:58213800-58215600	Enhancers	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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