Variant report

Variant	rs7535181
Chromosome Location	chr1:92843178-92843179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:92841925..92844567-chr1:92845090..92847117,2	MCF-7	breast:

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10399671	0.81[AFR][1000 genomes]
rs11164423	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11166542	0.92[ASW][hapmap];1.00[CEU][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12070923	0.96[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12075243	1.00[CEU][hapmap]
rs12078746	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12090761	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12098095	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.96[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12564911	1.00[CEU][hapmap]
rs12565259	1.00[CEU][hapmap]
rs12566527	1.00[CEU][hapmap]
rs17131621	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[LWK][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17131632	0.81[AFR][1000 genomes]
rs17131636	1.00[CEU][hapmap]
rs1819256	0.90[AFR][1000 genomes]
rs4617457	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55993081	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56112620	0.91[EUR][1000 genomes]
rs56665661	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57992264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58142139	0.88[AMR][1000 genomes]
rs6603970	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6662381	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6662565	1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6672838	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs6679419	0.91[EUR][1000 genomes]
rs6681027	1.00[ASW][hapmap];1.00[CEU][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6683456	0.81[AFR][1000 genomes]
rs6694248	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6695475	1.00[CEU][hapmap];0.88[AMR][1000 genomes]
rs72958703	0.91[EUR][1000 genomes]
rs72958746	0.88[AMR][1000 genomes]
rs72958774	0.88[AMR][1000 genomes]
rs72958796	0.88[AMR][1000 genomes]
rs72960815	0.88[AMR][1000 genomes]
rs72960831	0.82[AMR][1000 genomes]
rs72960835	0.82[AMR][1000 genomes]
rs72960860	0.82[AMR][1000 genomes]
rs72960870	0.82[AMR][1000 genomes]
rs72960872	0.92[AFR][1000 genomes]
rs7513631	0.82[AMR][1000 genomes]
rs7519603	1.00[CEU][hapmap]
rs7520555	1.00[CEU][hapmap]
rs7520675	1.00[AMR][1000 genomes]
rs7522789	0.91[EUR][1000 genomes]
rs7527960	0.94[AMR][1000 genomes]
rs7529971	1.00[CEU][hapmap]
rs7546528	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92765800-92850000	Weak transcription	Small Intestine	intestine
2	chr1:92792600-92846600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr1:92792800-92850800	Weak transcription	Fetal Heart	heart
4	chr1:92795200-92846600	Weak transcription	Gastric	stomach
5	chr1:92795200-92850200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr1:92795200-92851400	Weak transcription	Spleen	Spleen
7	chr1:92798200-92846800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:92804400-92846400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr1:92804400-92853200	Weak transcription	NHEK	skin
10	chr1:92815000-92853200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:92816000-92851400	Weak transcription	A549	lung
12	chr1:92816400-92846800	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr1:92817400-92851400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr1:92818000-92846200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr1:92818000-92846400	Weak transcription	Brain Angular Gyrus	brain
16	chr1:92818000-92851600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr1:92818000-92852600	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:92818200-92851600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr1:92818800-92853000	Weak transcription	Osteobl	bone
20	chr1:92819000-92846400	Weak transcription	Brain Hippocampus Middle	brain
21	chr1:92823600-92853200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:92823800-92846600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr1:92824000-92846600	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr1:92824000-92846600	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr1:92824000-92851400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr1:92824400-92846200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr1:92824400-92846200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr1:92824400-92850200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr1:92824400-92851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr1:92824400-92852400	Weak transcription	Colonic Mucosa	Colon
31	chr1:92824600-92846200	Weak transcription	Brain Germinal Matrix	brain
32	chr1:92824600-92850200	Weak transcription	Fetal Brain Female	brain
33	chr1:92824600-92851400	Weak transcription	Brain Substantia Nigra	brain
34	chr1:92824600-92851400	Weak transcription	Placenta	Placenta
35	chr1:92824600-92851400	Weak transcription	NHDF-Ad	bronchial
36	chr1:92824800-92846200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr1:92825400-92849800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr1:92825400-92851400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr1:92825600-92846200	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr1:92825600-92846400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:92825600-92851400	Weak transcription	Fetal Kidney	kidney
42	chr1:92825600-92852400	Weak transcription	HepG2	liver
43	chr1:92825600-92852800	Weak transcription	HMEC	breast
44	chr1:92825800-92846000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr1:92825800-92846200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr1:92825800-92850200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
47	chr1:92826000-92846400	Weak transcription	Fetal Muscle Trunk	muscle
48	chr1:92826000-92850400	Weak transcription	Lung	lung
49	chr1:92826000-92851400	Weak transcription	HSMMtube	muscle
50	chr1:92826000-92852600	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links