Variant report

Variant	rs7535486
Chromosome Location	chr1:93377792-93377793
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10465757	0.89[EUR][1000 genomes]
rs12564537	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs12565227	0.89[EUR][1000 genomes]
rs17131655	0.89[EUR][1000 genomes]
rs2785608	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4130290	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[EUR][1000 genomes]
rs4240963	1.00[EUR][1000 genomes]
rs4264009	1.00[EUR][1000 genomes]
rs4442373	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4847388	1.00[EUR][1000 genomes]
rs501894	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs55995837	0.89[EUR][1000 genomes]
rs56185219	0.89[EUR][1000 genomes]
rs56764656	1.00[EUR][1000 genomes]
rs59552478	1.00[EUR][1000 genomes]
rs59925050	0.89[EUR][1000 genomes]
rs60842823	1.00[EUR][1000 genomes]
rs61259042	1.00[EUR][1000 genomes]
rs652456	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6669107	1.00[EUR][1000 genomes]
rs74101310	1.00[EUR][1000 genomes]
rs74101322	0.89[EUR][1000 genomes]
rs74101354	1.00[EUR][1000 genomes]
rs74101356	1.00[EUR][1000 genomes]
rs74101362	1.00[EUR][1000 genomes]
rs74101363	0.89[EUR][1000 genomes]
rs7548287	0.89[EUR][1000 genomes]
rs9439942	0.89[EUR][1000 genomes]
rs969698	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93366400-93409200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr1:93367000-93390400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr1:93367800-93379200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:93369000-93394200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr1:93370200-93378000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:93370200-93378600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr1:93370400-93395000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
8	chr1:93370600-93395000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr1:93374200-93378200	Weak transcription	Liver	Liver
10	chr1:93374200-93384800	Weak transcription	Primary B cells from cord blood	blood
11	chr1:93374400-93379000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr1:93374600-93382200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr1:93375200-93384400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr1:93375400-93380400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr1:93375400-93380800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr1:93375600-93380800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr1:93375800-93381000	Weak transcription	NHLF	lung
18	chr1:93376000-93380600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr1:93376000-93381000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:93376000-93381000	Weak transcription	HepG2	liver
21	chr1:93376000-93381200	Weak transcription	Osteobl	bone
22	chr1:93376000-93382000	Weak transcription	Gastric	stomach
23	chr1:93376000-93382000	Weak transcription	Rectal Mucosa Donor 31	rectum
24	chr1:93376000-93382400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:93376000-93384400	Weak transcription	Primary T cells from cord blood	blood
26	chr1:93376000-93387000	Weak transcription	Brain Anterior Caudate	brain
27	chr1:93376000-93388200	Weak transcription	Brain Hippocampus Middle	brain
28	chr1:93376000-93395400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr1:93376000-93400400	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr1:93376600-93378600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:93376600-93378600	Weak transcription	HMEC	breast
32	chr1:93376600-93386800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr1:93376600-93388000	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr1:93376800-93378400	Weak transcription	NHEK	skin
35	chr1:93376800-93379400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
36	chr1:93376800-93380000	Weak transcription	Primary B cells from peripheral blood	blood
37	chr1:93376800-93395400	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr1:93377000-93378200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr1:93377000-93382200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr1:93377000-93401400	Weak transcription	Dnd41	blood
41	chr1:93377200-93382800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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