Variant report

Variant	rs7535534
Chromosome Location	chr1:75603634-75603635
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1007512	0.81[ASN][1000 genomes]
rs10493552	0.87[ASN][1000 genomes]
rs10493553	0.87[ASN][1000 genomes]
rs11162513	0.80[ASN][1000 genomes]
rs11162567	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12036667	0.88[ASN][1000 genomes]
rs12041465	0.87[ASN][1000 genomes]
rs12563445	0.87[ASN][1000 genomes]
rs12565272	0.87[ASN][1000 genomes]
rs1526504	0.88[ASN][1000 genomes]
rs1526505	0.88[ASN][1000 genomes]
rs1526507	0.80[ASN][1000 genomes]
rs1526513	0.95[ASN][1000 genomes]
rs17096272	0.87[ASN][1000 genomes]
rs17096289	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7520936	0.80[ASN][1000 genomes]
rs941032	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871743	chr1:75235082-75714554	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3368999	chr1:75524762-75933220	Bivalent/Poised TSS Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:75600600-75603800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
2	chr1:75602600-75604800	Weak transcription	Right Atrium	heart
3	chr1:75603400-75603800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
4	chr1:75603400-75604000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
5	chr1:75603600-75613200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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