Variant report

Variant	rs7536519
Chromosome Location	chr1:211094162-211094163
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10494931	0.81[CEU][hapmap]
rs10494932	0.81[CEU][hapmap]
rs10863870	0.84[EUR][1000 genomes]
rs10863874	1.00[CEU][hapmap];0.84[JPT][hapmap];0.93[EUR][1000 genomes]
rs11119658	0.81[CEU][hapmap]
rs11485203	0.97[EUR][1000 genomes]
rs11582507	0.81[CEU][hapmap]
rs11583101	0.81[CEU][hapmap]
rs12760791	0.81[CEU][hapmap]
rs1393026	1.00[CEU][hapmap];0.97[GIH][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs1393028	0.81[CEU][hapmap]
rs1501558	0.81[CEU][hapmap]
rs1501566	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1501567	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1501568	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1501569	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1539531	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.89[TSI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17188748	0.88[CEU][hapmap]
rs1875435	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2221250	0.81[CEU][hapmap]
rs2358214	0.84[EUR][1000 genomes]
rs33985151	0.81[CEU][hapmap]
rs35711968	0.92[EUR][1000 genomes]
rs61848994	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6669457	1.00[CEU][hapmap];0.84[JPT][hapmap];0.85[EUR][1000 genomes]
rs6678283	1.00[CEU][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.98[TSI][hapmap];0.95[EUR][1000 genomes]
rs6698448	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7517771	0.95[EUR][1000 genomes]
rs7535286	0.95[EUR][1000 genomes]
rs905115	0.89[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832503	chr1:210948760-211103163	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv873154	chr1:211057697-211117197	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7536519	IKBKE	cis	cerebellum	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211089200-211098800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:211091600-211096000	Weak transcription	HSMMtube	muscle
3	chr1:211091800-211096200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr1:211092000-211096400	Weak transcription	Brain Anterior Caudate	brain
5	chr1:211092000-211096400	Weak transcription	Brain Cingulate Gyrus	brain
6	chr1:211093400-211110800	Weak transcription	HSMM	muscle
7	chr1:211094000-211095400	Enhancers	Liver	Liver
8	chr1:211094000-211095400	Enhancers	K562	blood

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