Variant report

Variant	rs7536714
Chromosome Location	chr1:94381597-94381598
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10159000	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10489607	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10874811	0.99[ASN][1000 genomes]
rs10874812	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165031	0.97[ASN][1000 genomes]
rs11165034	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165037	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12068168	0.88[ASN][1000 genomes]
rs12068345	0.98[ASN][1000 genomes]
rs12089163	0.97[ASN][1000 genomes]
rs12122406	0.93[ASN][1000 genomes]
rs12129986	0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12130623	0.94[ASN][1000 genomes]
rs12131163	0.93[ASN][1000 genomes]
rs12131247	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12135991	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12140097	0.98[ASN][1000 genomes]
rs12401354	0.90[ASN][1000 genomes]
rs1473711	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989020	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1989021	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2017736	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2092697	0.93[ASN][1000 genomes]
rs2143993	0.93[ASN][1000 genomes]
rs2273406	0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2391324	0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35674584	0.94[ASN][1000 genomes]
rs3827715	0.99[ASN][1000 genomes]
rs41303970	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4573532	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4598495	0.97[ASN][1000 genomes]
rs57387172	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60120441	0.97[ASN][1000 genomes]
rs61667071	0.97[ASN][1000 genomes]
rs6680027	0.95[ASN][1000 genomes]
rs6681078	0.97[ASN][1000 genomes]
rs6696758	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6699912	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700112	0.97[ASN][1000 genomes]
rs718873	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718874	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs718875	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs743119	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs761889	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs769211	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523355	chr1:94351328-94385591	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7536714	GCLM	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94375600-94421200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:94376000-94382000	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr1:94380400-94381800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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