Variant report

Variant	rs7536879
Chromosome Location	chr1:152228545-152228546
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10749670	0.89[ASN][1000 genomes]
rs10788831	0.89[ASN][1000 genomes]
rs10888470	0.83[ASN][1000 genomes]
rs10888471	0.84[ASN][1000 genomes]
rs10888473	0.86[ASN][1000 genomes]
rs10888475	0.88[ASN][1000 genomes]
rs10888476	0.86[ASN][1000 genomes]
rs10888477	0.90[ASN][1000 genomes]
rs10888478	0.89[ASN][1000 genomes]
rs11204937	0.81[ASN][1000 genomes]
rs11204938	0.81[ASN][1000 genomes]
rs11204939	0.84[ASN][1000 genomes]
rs11204944	0.84[ASN][1000 genomes]
rs11204947	0.86[ASN][1000 genomes]
rs11204948	0.86[ASN][1000 genomes]
rs11204951	0.89[ASN][1000 genomes]
rs11204952	0.85[ASN][1000 genomes]
rs11204956	0.85[ASN][1000 genomes]
rs11485508	0.81[ASN][1000 genomes]
rs12027807	0.81[ASN][1000 genomes]
rs12409802	0.84[ASN][1000 genomes]
rs12748016	0.82[ASN][1000 genomes]
rs1390487	0.83[ASN][1000 genomes]
rs1390488	0.83[ASN][1000 genomes]
rs1466757	0.85[ASN][1000 genomes]
rs1845791	0.86[ASN][1000 genomes]
rs1969019	0.86[ASN][1000 genomes]
rs2132418	0.86[ASN][1000 genomes]
rs2338430	0.86[ASN][1000 genomes]
rs2879174	0.84[ASN][1000 genomes]
rs3126055	0.81[ASN][1000 genomes]
rs36033453	0.86[ASN][1000 genomes]
rs4256811	0.89[ASN][1000 genomes]
rs4326625	0.84[ASN][1000 genomes]
rs4341364	0.89[ASN][1000 genomes]
rs4361987	0.92[ASN][1000 genomes]
rs4456097	0.89[ASN][1000 genomes]
rs4466659	0.89[ASN][1000 genomes]
rs4511113	0.86[ASN][1000 genomes]
rs4845426	0.83[ASN][1000 genomes]
rs4845428	0.86[ASN][1000 genomes]
rs4845430	0.89[ASN][1000 genomes]
rs4845431	0.89[ASN][1000 genomes]
rs4845750	0.83[ASN][1000 genomes]
rs4845751	0.84[ASN][1000 genomes]
rs4845752	0.85[ASN][1000 genomes]
rs4845753	0.88[ASN][1000 genomes]
rs6587651	0.81[ASN][1000 genomes]
rs6666382	0.86[ASN][1000 genomes]
rs6670891	0.84[ASN][1000 genomes]
rs6675889	0.86[ASN][1000 genomes]
rs6678951	0.86[ASN][1000 genomes]
rs6692010	0.89[ASN][1000 genomes]
rs74127901	0.81[ASN][1000 genomes]
rs7534716	0.83[ASN][1000 genomes]
rs7535078	0.88[ASN][1000 genomes]
rs7535536	0.81[ASN][1000 genomes]
rs7537637	0.86[ASN][1000 genomes]
rs7540844	0.86[ASN][1000 genomes]
rs7543541	0.86[ASN][1000 genomes]
rs7550106	0.82[ASN][1000 genomes]
rs9436062	0.80[ASN][1000 genomes]
rs991231	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
2	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv946325	chr1:152221751-152240196	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152219400-152230200	Weak transcription	Ovary	ovary
2	chr1:152220800-152230400	Weak transcription	Brain Angular Gyrus	brain
3	chr1:152223200-152230400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:152223600-152229600	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr1:152224600-152230400	Weak transcription	Fetal Kidney	kidney
6	chr1:152225400-152229000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:152225400-152229000	Weak transcription	Esophagus	oesophagus
8	chr1:152225400-152232200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:152225600-152229000	Weak transcription	Aorta	Aorta
10	chr1:152225600-152232200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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