Variant report

Variant	rs7537388
Chromosome Location	chr1:211294879-211294880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11579711	0.82[EUR][1000 genomes]
rs11590375	0.93[AFR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12144775	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1338349	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538287	0.85[CEU][hapmap];0.81[GIH][hapmap]
rs1538289	0.91[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs17017226	0.85[CEU][hapmap];0.81[GIH][hapmap]
rs1933524	0.85[CEU][hapmap]
rs3111224	0.85[CEU][hapmap]
rs3120778	0.85[CEU][hapmap];0.81[GIH][hapmap];0.82[YRI][hapmap]
rs3125850	0.85[CEU][hapmap];0.81[GIH][hapmap];0.82[YRI][hapmap]
rs3828021	0.85[CEU][hapmap];0.81[GIH][hapmap]
rs6540658	0.85[CEU][hapmap];0.84[GIH][hapmap];0.81[TSI][hapmap];0.82[EUR][1000 genomes]
rs6540659	0.82[EUR][1000 genomes]
rs6660415	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.97[LWK][hapmap];0.95[MEX][hapmap];0.97[MKK][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs6668674	0.93[AFR][1000 genomes];0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6669706	0.81[GIH][hapmap]
rs7538435	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs867849	0.85[CEU][hapmap]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7537388	SERTAD4	cis	parietal	SCAN
rs7537388	KCNH1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:211280800-211300200	Weak transcription	HSMMtube	muscle
2	chr1:211285600-211299400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr1:211292400-211298000	Weak transcription	A549	lung
4	chr1:211292400-211298200	Weak transcription	HSMM	muscle
5	chr1:211292800-211305400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:211293200-211299400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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