Variant report
Variant | rs7537947 |
---|---|
Chromosome Location | chr1:225203656-225203657 |
allele | A/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:225202258..225204234-chr8:111898982..111900583,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10399959 | 1.00[EUR][1000 genomes] |
rs10495232 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs1078794 | 1.00[EUR][1000 genomes] |
rs10915724 | 1.00[EUR][1000 genomes] |
rs10915732 | 1.00[EUR][1000 genomes] |
rs11805350 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12059834 | 1.00[EUR][1000 genomes] |
rs12061265 | 1.00[EUR][1000 genomes] |
rs12066443 | 1.00[EUR][1000 genomes] |
rs12069808 | 1.00[EUR][1000 genomes] |
rs12071270 | 1.00[EUR][1000 genomes] |
rs12071776 | 1.00[EUR][1000 genomes] |
rs12074382 | 1.00[EUR][1000 genomes] |
rs12075769 | 1.00[EUR][1000 genomes] |
rs12079808 | 1.00[EUR][1000 genomes] |
rs12080062 | 1.00[EUR][1000 genomes] |
rs12086473 | 1.00[EUR][1000 genomes] |
rs12097593 | 1.00[EUR][1000 genomes] |
rs12239937 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13376360 | 1.00[EUR][1000 genomes] |
rs1395115 | 1.00[EUR][1000 genomes] |
rs1480102 | 1.00[EUR][1000 genomes] |
rs1580956 | 1.00[EUR][1000 genomes] |
rs16844321 | 1.00[EUR][1000 genomes] |
rs16844324 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16844328 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16844331 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16844347 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16844357 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs16855953 | 1.00[EUR][1000 genomes] |
rs16856828 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2127558 | 1.00[EUR][1000 genomes] |
rs2153246 | 1.00[EUR][1000 genomes] |
rs2244108 | 1.00[EUR][1000 genomes] |
rs2244109 | 1.00[EUR][1000 genomes] |
rs2244198 | 1.00[EUR][1000 genomes] |
rs2245097 | 1.00[EUR][1000 genomes] |
rs2254430 | 1.00[EUR][1000 genomes] |
rs2449262 | 1.00[EUR][1000 genomes] |
rs2449264 | 1.00[EUR][1000 genomes] |
rs2449265 | 1.00[EUR][1000 genomes] |
rs2449267 | 1.00[EUR][1000 genomes] |
rs2449268 | 1.00[EUR][1000 genomes] |
rs2449270 | 1.00[EUR][1000 genomes] |
rs2449271 | 1.00[EUR][1000 genomes] |
rs2449272 | 1.00[EUR][1000 genomes] |
rs2449275 | 1.00[EUR][1000 genomes] |
rs2449277 | 1.00[EUR][1000 genomes] |
rs2449278 | 1.00[EUR][1000 genomes] |
rs2449279 | 1.00[EUR][1000 genomes] |
rs2449283 | 1.00[EUR][1000 genomes] |
rs2449284 | 1.00[EUR][1000 genomes] |
rs2449286 | 1.00[EUR][1000 genomes] |
rs2449288 | 1.00[EUR][1000 genomes] |
rs2449289 | 1.00[EUR][1000 genomes] |
rs2449290 | 1.00[EUR][1000 genomes] |
rs2449294 | 1.00[EUR][1000 genomes] |
rs2449305 | 1.00[EUR][1000 genomes] |
rs2449306 | 1.00[EUR][1000 genomes] |
rs2449309 | 1.00[EUR][1000 genomes] |
rs2449312 | 1.00[EUR][1000 genomes] |
rs2449314 | 1.00[EUR][1000 genomes] |
rs2449317 | 1.00[EUR][1000 genomes] |
rs2449319 | 1.00[EUR][1000 genomes] |
rs2449321 | 1.00[EUR][1000 genomes] |
rs2449323 | 1.00[EUR][1000 genomes] |
rs2449324 | 1.00[EUR][1000 genomes] |
rs2456338 | 1.00[EUR][1000 genomes] |
rs2456343 | 1.00[EUR][1000 genomes] |
rs2456344 | 1.00[EUR][1000 genomes] |
rs2456346 | 1.00[EUR][1000 genomes] |
rs2456350 | 1.00[EUR][1000 genomes] |
rs2456352 | 1.00[EUR][1000 genomes] |
rs2456354 | 1.00[EUR][1000 genomes] |
rs2489299 | 1.00[EUR][1000 genomes] |
rs2489305 | 1.00[EUR][1000 genomes] |
rs2489307 | 1.00[EUR][1000 genomes] |
rs2489309 | 1.00[EUR][1000 genomes] |
rs2489315 | 1.00[EUR][1000 genomes] |
rs2489316 | 1.00[EUR][1000 genomes] |
rs2489317 | 1.00[EUR][1000 genomes] |
rs2489318 | 1.00[EUR][1000 genomes] |
rs2489319 | 1.00[EUR][1000 genomes] |
rs2489321 | 1.00[EUR][1000 genomes] |
rs2489323 | 1.00[EUR][1000 genomes] |
rs2489326 | 1.00[EUR][1000 genomes] |
rs2489329 | 1.00[EUR][1000 genomes] |
rs2489331 | 1.00[EUR][1000 genomes] |
rs2489333 | 1.00[EUR][1000 genomes] |
rs2489334 | 1.00[EUR][1000 genomes] |
rs2489335 | 1.00[EUR][1000 genomes] |
rs2489336 | 1.00[EUR][1000 genomes] |
rs2489339 | 1.00[EUR][1000 genomes] |
rs2489340 | 1.00[EUR][1000 genomes] |
rs2489342 | 1.00[EUR][1000 genomes] |
rs2489345 | 1.00[EUR][1000 genomes] |
rs2489347 | 1.00[EUR][1000 genomes] |
rs2489349 | 1.00[EUR][1000 genomes] |
rs2489350 | 1.00[EUR][1000 genomes] |
rs2489351 | 1.00[EUR][1000 genomes] |
rs2489354 | 1.00[EUR][1000 genomes] |
rs2489356 | 1.00[EUR][1000 genomes] |
rs2489357 | 1.00[EUR][1000 genomes] |
rs2489358 | 1.00[EUR][1000 genomes] |
rs2489359 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2489360 | 1.00[EUR][1000 genomes] |
rs2501065 | 1.00[EUR][1000 genomes] |
rs2501074 | 1.00[EUR][1000 genomes] |
rs2501076 | 1.00[EUR][1000 genomes] |
rs2501077 | 1.00[EUR][1000 genomes] |
rs2501079 | 1.00[EUR][1000 genomes] |
rs2501088 | 1.00[EUR][1000 genomes] |
rs2501103 | 1.00[EUR][1000 genomes] |
rs2501104 | 1.00[EUR][1000 genomes] |
rs2501112 | 1.00[EUR][1000 genomes] |
rs2501113 | 1.00[EUR][1000 genomes] |
rs2501117 | 1.00[EUR][1000 genomes] |
rs2501121 | 1.00[EUR][1000 genomes] |
rs2501124 | 1.00[EUR][1000 genomes] |
rs2501128 | 1.00[EUR][1000 genomes] |
rs2501136 | 1.00[EUR][1000 genomes] |
rs2501137 | 1.00[EUR][1000 genomes] |
rs2501142 | 1.00[EUR][1000 genomes] |
rs2501144 | 1.00[EUR][1000 genomes] |
rs2501148 | 1.00[EUR][1000 genomes] |
rs2501150 | 1.00[EUR][1000 genomes] |
rs2501152 | 1.00[EUR][1000 genomes] |
rs2501157 | 1.00[EUR][1000 genomes] |
rs2516334 | 1.00[EUR][1000 genomes] |
rs2662910 | 1.00[EUR][1000 genomes] |
rs2662911 | 1.00[EUR][1000 genomes] |
rs2662913 | 1.00[EUR][1000 genomes] |
rs2802546 | 1.00[EUR][1000 genomes] |
rs2802547 | 1.00[EUR][1000 genomes] |
rs2802567 | 1.00[EUR][1000 genomes] |
rs2802736 | 1.00[EUR][1000 genomes] |
rs28789844 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs28871966 | 1.00[EUR][1000 genomes] |
rs2929627 | 1.00[EUR][1000 genomes] |
rs2929629 | 1.00[EUR][1000 genomes] |
rs2929632 | 1.00[EUR][1000 genomes] |
rs3102105 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs3991375 | 1.00[EUR][1000 genomes] |
rs4121159 | 1.00[EUR][1000 genomes] |
rs4256778 | 1.00[EUR][1000 genomes] |
rs4275419 | 1.00[EUR][1000 genomes] |
rs4475714 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4639722 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58205526 | 1.00[EUR][1000 genomes] |
rs58355180 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs58651151 | 1.00[EUR][1000 genomes] |
rs58823550 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs59730608 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs59730777 | 1.00[EUR][1000 genomes] |
rs59839860 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60434067 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs60727542 | 0.90[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61269802 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61329501 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs61483735 | 1.00[EUR][1000 genomes] |
rs6426164 | 1.00[EUR][1000 genomes] |
rs6656178 | 1.00[EUR][1000 genomes] |
rs6666664 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6670335 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6673779 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs6675157 | 1.00[EUR][1000 genomes] |
rs6675162 | 1.00[EUR][1000 genomes] |
rs6680659 | 1.00[EUR][1000 genomes] |
rs6683197 | 1.00[EUR][1000 genomes] |
rs6689608 | 1.00[EUR][1000 genomes] |
rs6693680 | 1.00[EUR][1000 genomes] |
rs6694400 | 1.00[EUR][1000 genomes] |
rs6698293 | 1.00[EUR][1000 genomes] |
rs6698942 | 1.00[EUR][1000 genomes] |
rs6699883 | 1.00[EUR][1000 genomes] |
rs73129804 | 1.00[EUR][1000 genomes] |
rs7418261 | 1.00[EUR][1000 genomes] |
rs7515136 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7523371 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7524227 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7525497 | 0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7526764 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7533311 | 1.00[EUR][1000 genomes] |
rs7533415 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7535962 | 1.00[EUR][1000 genomes] |
rs7536912 | 1.00[EUR][1000 genomes] |
rs7544960 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7555397 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs769297 | 1.00[EUR][1000 genomes] |
rs9286991 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9426101 | 1.00[EUR][1000 genomes] |
rs9426103 | 1.00[EUR][1000 genomes] |
rs9426104 | 1.00[EUR][1000 genomes] |
rs9426147 | 1.00[EUR][1000 genomes] |
rs9426156 | 1.00[EUR][1000 genomes] |
rs9426159 | 1.00[EUR][1000 genomes] |
rs9660934 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs9725252 | 1.00[EUR][1000 genomes] |
rs9803691 | 1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | esv2757773 | chr1:225087924-225253274 | Active TSS ZNF genes & repeats Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
2 | esv2759001 | chr1:225087924-225253274 | Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
3 | esv3438976 | chr1:225133567-225248753 | Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
4 | esv1804634 | chr1:225137134-225206826 | Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
5 | nsv873225 | chr1:225162060-225373936 | ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
6 | nsv549262 | chr1:225191852-225319898 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
7 | nsv549263 | chr1:225202426-225319898 | ZNF genes & repeats Weak transcription Enhancers Strong transcription Genic enhancers | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:225199400-225207000 | Weak transcription | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
2 | chr1:225201200-225206200 | ZNF genes & repeats | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |
3 | chr1:225202000-225205200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
4 | chr1:225202200-225203800 | ZNF genes & repeats | Primary hematopoietic stem cells | blood |
5 | chr1:225202200-225204800 | Weak transcription | Fetal Stomach | stomach |
6 | chr1:225202800-225204000 | Strong transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
7 | chr1:225202800-225204800 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
8 | chr1:225203400-225203800 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
9 | chr1:225203400-225203800 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
10 | chr1:225203400-225203800 | ZNF genes & repeats | Primary hematopoietic stem cells short term culture | blood |
11 | chr1:225203400-225203800 | ZNF genes & repeats | Ovary | ovary |
12 | chr1:225203400-225204000 | ZNF genes & repeats | Fetal Intestine Small | intestine |
13 | chr1:225203400-225205000 | Weak transcription | Fetal Intestine Large | intestine |
14 | chr1:225203600-225203800 | ZNF genes & repeats | Pancreas | Pancrea |