Variant report

Variant	rs7539757
Chromosome Location	chr1:92924057-92924058
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10875319	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs10875349	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11164226	0.90[ASN][1000 genomes]
rs11164288	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11164312	0.90[ASN][1000 genomes]
rs11164349	0.85[EUR][1000 genomes]
rs11164546	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11577572	1.00[JPT][hapmap]
rs11577839	0.90[ASN][1000 genomes]
rs11578012	0.90[ASN][1000 genomes]
rs11578400	0.90[ASN][1000 genomes]
rs11585255	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11586989	0.80[ASN][1000 genomes]
rs11588044	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11589858	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs11803383	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11803457	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12024731	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12086394	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12094293	0.90[ASN][1000 genomes]
rs12401372	0.90[ASN][1000 genomes]
rs12404806	1.00[JPT][hapmap]
rs12407622	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12727665	0.90[ASN][1000 genomes]
rs12731923	0.90[ASN][1000 genomes]
rs12735898	0.90[ASN][1000 genomes]
rs12740246	1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs12755781	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12757533	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1325435	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1487536	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1487540	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs1542685	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17519972	1.00[JPT][hapmap]
rs1809606	0.90[ASN][1000 genomes]
rs1872007	0.80[ASN][1000 genomes]
rs2004814	0.90[ASN][1000 genomes]
rs2046620	0.80[ASN][1000 genomes]
rs2087194	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs2391158	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2391161	0.80[EUR][1000 genomes]
rs2391162	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3103176	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.92[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs3103178	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.90[ASN][1000 genomes]
rs3103181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs3122321	0.80[ASN][1000 genomes]
rs3131813	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3131814	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3131827	0.80[ASN][1000 genomes]
rs3131828	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs34090353	0.90[ASN][1000 genomes]
rs35580949	0.90[ASN][1000 genomes]
rs3929737	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4393167	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4414050	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4658299	1.00[JPT][hapmap]
rs4658300	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4949888	1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4970699	0.90[ASN][1000 genomes]
rs4970713	0.90[ASN][1000 genomes]
rs6603962	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6603971	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6604088	0.90[ASN][1000 genomes]
rs6604090	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6661384	0.96[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.87[GIH][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6662379	0.90[ASN][1000 genomes]
rs6663114	0.83[EUR][1000 genomes]
rs6663118	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6663278	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6663905	0.90[ASN][1000 genomes]
rs6668803	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6692287	0.81[EUR][1000 genomes]
rs6702267	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72720457	0.90[ASN][1000 genomes]
rs733012	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs745793	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7517541	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7518974	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7520275	0.96[CEU][hapmap];1.00[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7524120	0.90[ASN][1000 genomes]
rs7543947	0.83[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.91[TSI][hapmap];0.89[YRI][hapmap];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7550680	0.90[ASN][1000 genomes]
rs7554154	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs912794	0.86[EUR][1000 genomes]
rs9439911	0.90[ASN][1000 genomes]
rs9440085	0.80[EUR][1000 genomes]
rs9943178	0.90[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7539757	KIAA1107	cis	cerebellum	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:92923000-92924400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:92923200-92925400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:92923400-92925000	Enhancers	Primary hematopoietic stem cells	blood
4	chr1:92923400-92925200	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr1:92923400-92925200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr1:92923600-92925400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr1:92923800-92924400	Weak transcription	Dnd41	blood
8	chr1:92923800-92924800	Weak transcription	Fetal Thymus	thymus
9	chr1:92923800-92924800	Weak transcription	Thymus	Thymus
10	chr1:92924000-92924200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr1:92924000-92925000	Weak transcription	Primary B cells from cord blood	blood

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