Variant report

Variant	rs7540417
Chromosome Location	chr1:195776071-195776072
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12092340	1.00[AMR][1000 genomes]
rs12092898	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41391648	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56759581	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58331542	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61046734	0.84[AFR][1000 genomes]
rs74132921	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132922	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74132924	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7537832	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7538590	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7540904	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548571	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs990925	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs990926	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872937	chr1:195493538-195849028	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv1007203	chr1:195672857-195902360	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv998365	chr1:195755734-195779949	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv872941	chr1:195770204-195820337	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:195764400-195789400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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