Variant report
Variant | rs7542433 |
---|---|
Chromosome Location | chr1:86351624-86351625 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11161689 | 0.86[EUR][1000 genomes] |
rs11161691 | 0.86[EUR][1000 genomes] |
rs11161692 | 0.87[EUR][1000 genomes] |
rs11161694 | 0.87[EUR][1000 genomes] |
rs11161698 | 0.88[EUR][1000 genomes] |
rs11161702 | 0.88[AMR][1000 genomes] |
rs11589722 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs11799965 | 0.85[AMR][1000 genomes] |
rs11803202 | 0.86[AMR][1000 genomes];0.81[ASN][1000 genomes] |
rs12091504 | 0.87[EUR][1000 genomes] |
rs12725203 | 0.88[EUR][1000 genomes] |
rs12725350 | 0.88[EUR][1000 genomes] |
rs12726975 | 0.87[EUR][1000 genomes] |
rs12727503 | 0.88[EUR][1000 genomes] |
rs12731603 | 0.87[EUR][1000 genomes] |
rs12732365 | 0.83[EUR][1000 genomes] |
rs12734458 | 0.86[EUR][1000 genomes] |
rs12735496 | 0.88[EUR][1000 genomes] |
rs12739200 | 0.86[EUR][1000 genomes] |
rs12739425 | 0.88[EUR][1000 genomes] |
rs12739620 | 0.88[EUR][1000 genomes] |
rs12740827 | 0.88[EUR][1000 genomes] |
rs12740836 | 0.88[EUR][1000 genomes] |
rs12745489 | 0.82[EUR][1000 genomes] |
rs12746617 | 0.86[EUR][1000 genomes] |
rs12747420 | 0.86[EUR][1000 genomes] |
rs12752474 | 0.86[EUR][1000 genomes] |
rs12753255 | 0.85[EUR][1000 genomes] |
rs12755099 | 0.85[EUR][1000 genomes] |
rs12755267 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs12755570 | 0.88[EUR][1000 genomes] |
rs12757388 | 0.88[EUR][1000 genomes] |
rs12759687 | 0.87[EUR][1000 genomes] |
rs1604567 | 0.86[EUR][1000 genomes] |
rs2086495 | 0.87[EUR][1000 genomes] |
rs2170331 | 0.85[EUR][1000 genomes] |
rs28415684 | 0.83[EUR][1000 genomes] |
rs28571037 | 0.82[EUR][1000 genomes] |
rs35545564 | 0.87[EUR][1000 genomes] |
rs35556419 | 0.85[AMR][1000 genomes] |
rs35841238 | 0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4146295 | 1.00[CHB][hapmap] |
rs6576790 | 0.82[JPT][hapmap] |
rs6657706 | 0.80[EUR][1000 genomes] |
rs67487620 | 0.82[EUR][1000 genomes] |
rs7520948 | 0.87[EUR][1000 genomes] |
rs7523196 | 0.85[EUR][1000 genomes] |
rs7530839 | 0.85[EUR][1000 genomes] |
rs7539765 | 0.87[EUR][1000 genomes] |
rs7554796 | 0.87[EUR][1000 genomes] |
rs7556366 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv817212 | chr1:86127851-86658426 | Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
2 | nsv546721 | chr1:86226352-86392577 | Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
3 | nsv999743 | chr1:86241246-86364846 | Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
4 | nsv1011293 | chr1:86270649-86416972 | Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
5 | nsv546722 | chr1:86278315-86891073 | Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA | 9 gene(s) | inside rSNPs | diseases |
6 | nsv871189 | chr1:86315724-86402244 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
7 | esv1810714 | chr1:86339811-86392577 | Weak transcription Enhancers ZNF genes & repeats Strong transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
8 | nsv823409 | chr1:86342838-86352563 | Strong transcription Enhancers ZNF genes & repeats Weak transcription | TF binding regionChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:86342400-86370600 | Weak transcription | Primary hematopoietic stem cells short term culture | blood |
2 | chr1:86345600-86370600 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
3 | chr1:86347000-86366000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Male | -- |