Variant report
| Variant | rs7543421 |
|---|---|
| Chromosome Location | chr1:224662611-224662612 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10495220 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap] |
| rs10799573 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs10799574 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1112556 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs12124686 | 1.00[CHB][hapmap] |
| rs12128292 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12140423 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs1361618 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs1572992 | 0.83[AMR][1000 genomes] |
| rs2405023 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs2405028 | 0.84[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs3958434 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs4517322 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs4653588 | 0.83[AMR][1000 genomes] |
| rs4654045 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6426129 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6688125 | 0.82[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs6693653 | 1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs7531794 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7536124 | 0.83[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7536574 | 0.85[AFR][1000 genomes];0.83[AMR][1000 genomes] |
| rs7542507 | 0.83[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv8868 | chr1:224383023-224752531 | Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
| 2 | nsv1014717 | chr1:224551939-224885543 | Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| 3 | nsv535311 | chr1:224551939-224885543 | Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 20 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:224662600-224668800 | Weak transcription | Esophagus | oesophagus |
