Variant report

Variant	rs7543721
Chromosome Location	chr1:93179678-93179679
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6604019	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6604021	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6664425	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6689700	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6690641	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6695810	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6698896	0.80[AFR][1000 genomes]
rs6700724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1794348	chr1:93090476-93192932	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv1802611	chr1:93090476-93219907	Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv997898	chr1:93167128-93228156	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93098400-93205400	Weak transcription	NHLF	lung
2	chr1:93123600-93213400	Weak transcription	Gastric	stomach
3	chr1:93155800-93213400	Weak transcription	Lung	lung
4	chr1:93161000-93197400	Weak transcription	Primary B cells from cord blood	blood
5	chr1:93161000-93197800	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr1:93161000-93199000	Weak transcription	Left Ventricle	heart
7	chr1:93163800-93190000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr1:93170200-93189800	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr1:93174400-93202000	Weak transcription	Fetal Heart	heart
10	chr1:93175600-93180000	Weak transcription	Stomach Mucosa	stomach
11	chr1:93175800-93190200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:93175800-93199400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:93176000-93183200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:93177800-93197600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:93178400-93181200	Weak transcription	Fetal Intestine Small	intestine
16	chr1:93179000-93180800	Enhancers	HepG2	liver
17	chr1:93179200-93179800	Active TSS	Liver	Liver
18	chr1:93179200-93180400	Enhancers	Fetal Intestine Large	intestine
19	chr1:93179400-93180200	Enhancers	A549	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links