The 2.0 version of rSNPBase

Variant report

Variant rs7544698
Chromosome Location chr1:220829618-220829619
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:57 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:220778800-220837200 Weak transcription NHEK skin
2 chr1:220784200-220836600 Weak transcription Fetal Lung lung
3 chr1:220791200-220841200 Weak transcription HMEC breast
4 chr1:220792000-220834200 Weak transcription Pancreatic Islets Pancreatic Islet
5 chr1:220798000-220836400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:220800000-220837800 Weak transcription Esophagus oesophagus
7 chr1:220807400-220829800 Weak transcription Skeletal Muscle Male skeletal muscle
8 chr1:220807800-220836400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr1:220813600-220836000 Weak transcription Brain Cingulate Gyrus brain
10 chr1:220815800-220837200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
11 chr1:220816200-220836200 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
12 chr1:220816600-220834200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr1:220816600-220836000 Weak transcription Fetal Kidney kidney
14 chr1:220820400-220836600 Weak transcription Fetal Adrenal Gland Adrenal Gland
15 chr1:220821600-220834600 Weak transcription Brain Inferior Temporal Lobe brain
16 chr1:220822000-220836800 Weak transcription Pancreas Pancrea
17 chr1:220823200-220829800 Strong transcription Cortex derived primary cultured neurospheres brain
18 chr1:220823200-220835800 Strong transcription Breast Myoepithelial Primary Cells Breast
19 chr1:220823400-220830400 Strong transcription HUES64 Cell Line embryonic stem cell
20 chr1:220823400-220830600 Strong transcription HUES48 Cell Line embryonic stem cell
21 chr1:220823400-220835600 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
22 chr1:220823800-220831000 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
23 chr1:220824800-220829800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
24 chr1:220825400-220830600 Strong transcription Adipose Nuclei Adipose
25 chr1:220825600-220836200 Weak transcription Brain Hippocampus Middle brain
26 chr1:220826200-220830600 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:220827000-220829800 Strong transcription Brain Anterior Caudate brain
28 chr1:220827000-220831400 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
29 chr1:220827200-220829800 Genic enhancers Fetal Brain Female brain
30 chr1:220827600-220837200 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
31 chr1:220827600-220839600 Weak transcription ES-I3 Cell Line embryonic stem cell
32 chr1:220827800-220835000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
33 chr1:220827800-220835200 Weak transcription HUES6 Cell Line embryonic stem cell
34 chr1:220828000-220831400 Weak transcription iPS-18 Cell Line embryonic stem cell
35 chr1:220828200-220837000 Weak transcription Brain Germinal Matrix brain
36 chr1:220828400-220830000 Enhancers Fetal Brain Male brain
37 chr1:220828600-220829800 Enhancers GM12878-XiMat blood
38 chr1:220828600-220830000 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
39 chr1:220828600-220830800 Weak transcription Fetal Intestine Large intestine
40 chr1:220828600-220835000 Weak transcription H9 Cell Line embryonic stem cell
41 chr1:220828800-220835000 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr1:220828800-220839800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr1:220829200-220835200 Weak transcription Left Ventricle heart
44 chr1:220829400-220832200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
45 chr1:220829400-220834400 Weak transcription Aorta Aorta
46 chr1:220829400-220835000 Weak transcription Duodenum Smooth Muscle Duodenum
47 chr1:220829400-220836800 Weak transcription Rectal Smooth Muscle rectum
48 chr1:220829400-220837200 Weak transcription Brain Angular Gyrus brain
49 chr1:220829400-220837200 Weak transcription Stomach Smooth Muscle stomach
50 chr1:220829400-220839600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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Last update: Aug 31, 2015