Variant report

Variant	rs7544843
Chromosome Location	chr1:58263767-58263768
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10889072	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs11207109	0.87[ASN][1000 genomes]
rs11207112	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1323838	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1581762	0.86[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap]
rs6659795	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs706411	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7515680	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7549145	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7554147	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs852757	0.96[CEU][hapmap];0.84[MEX][hapmap];0.98[TSI][hapmap]
rs852768	1.00[CEU][hapmap];0.91[GIH][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs852769	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs852772	0.85[EUR][1000 genomes]
rs852774	0.95[EUR][1000 genomes]
rs852775	0.95[EUR][1000 genomes]
rs852778	0.95[EUR][1000 genomes]
rs852782	0.93[EUR][1000 genomes]
rs852784	0.93[EUR][1000 genomes]
rs852792	0.81[CEU][hapmap]
rs852795	0.81[CEU][hapmap]
rs927614	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1015057	chr1:57976993-58793962	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv530017	chr1:58002290-58669736	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv431379	chr1:58224212-58802608	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv829937	chr1:58258288-58406506	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:58260000-58263800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:58261800-58267400	Enhancers	Fetal Brain Male	brain
3	chr1:58262200-58264000	Enhancers	Fetal Brain Female	brain
4	chr1:58262400-58264400	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr1:58262400-58264600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr1:58262800-58263800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr1:58263000-58264000	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr1:58263400-58263800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:58263600-58264400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:58263600-58264400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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