Variant report

Variant	rs7546433
Chromosome Location	chr1:215880177-215880178
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10864183	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs11120598	0.84[CHD][hapmap];0.89[JPT][hapmap]
rs11578710	0.81[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap]
rs12403674	0.84[JPT][hapmap]
rs2364859	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2820675	0.81[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap]
rs2820692	0.81[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap]
rs2820693	0.81[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap]
rs2820694	0.81[CEU][hapmap];0.85[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap];0.81[MEX][hapmap]
rs2820696	0.81[CEU][hapmap];0.81[CHB][hapmap];0.84[CHD][hapmap];0.89[JPT][hapmap]
rs3845527	0.84[JPT][hapmap]
rs4375233	0.84[JPT][hapmap]
rs4375237	0.81[CHB][hapmap];0.82[CHD][hapmap];0.89[JPT][hapmap]
rs4628479	0.84[JPT][hapmap]
rs4655419	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4655423	0.84[JPT][hapmap]
rs57472918	1.00[ASN][1000 genomes]
rs61828172	1.00[ASN][1000 genomes]
rs6665313	0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430324	chr1:215649163-216082605	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv873171	chr1:215825167-215925167	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7546433	ATF3	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:215878200-215883600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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