Variant report

Variant	rs7548893
Chromosome Location	chr1:220659533-220659534
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10495147	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12046244	0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3842967	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4120669	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4846647	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7552884	0.82[AFR][1000 genomes]
rs7555225	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220657000-220660800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:220657400-220660200	Enhancers	Pancreatic Islets	Pancreatic Islet
3	chr1:220657600-220660600	Weak transcription	Hela-S3	cervix
4	chr1:220657800-220660000	Weak transcription	Fetal Intestine Large	intestine
5	chr1:220658600-220665800	Weak transcription	Adipose Nuclei	Adipose
6	chr1:220659200-220660600	Weak transcription	Placenta	Placenta
7	chr1:220659400-220660600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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