Variant report

Variant	rs7550770
Chromosome Location	chr1:94429246-94429247
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94424138..94425931-chr1:94428683..94431238,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1159834	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11804053	1.00[EUR][1000 genomes]
rs11804187	1.00[EUR][1000 genomes]
rs11807845	1.00[EUR][1000 genomes]
rs12407172	0.86[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs17110878	1.00[EUR][1000 genomes]
rs17110898	1.00[EUR][1000 genomes]
rs17878956	1.00[EUR][1000 genomes]
rs17881957	1.00[EUR][1000 genomes]
rs17884580	1.00[EUR][1000 genomes]
rs17884925	1.00[EUR][1000 genomes]
rs17885147	1.00[EUR][1000 genomes]
rs34212520	1.00[EUR][1000 genomes]
rs56260099	1.00[EUR][1000 genomes]
rs60759501	1.00[EUR][1000 genomes]
rs61597540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6677399	1.00[EUR][1000 genomes]
rs714096	0.86[AMR][1000 genomes]
rs74102018	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs74102090	1.00[EUR][1000 genomes]
rs7530845	0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs7535837	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516137	chr1:94404238-94504545	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94422600-94445000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:94423600-94430800	Weak transcription	Pancreas	Pancrea
3	chr1:94423600-94433200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr1:94423600-94434800	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr1:94423800-94429400	Weak transcription	Aorta	Aorta
6	chr1:94425600-94429800	Enhancers	Liver	Liver
7	chr1:94425600-94435600	Enhancers	HMEC	breast
8	chr1:94425800-94431200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr1:94426200-94432400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr1:94426400-94430200	Weak transcription	Placenta	Placenta
11	chr1:94426600-94430200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:94426600-94431200	Weak transcription	Psoas Muscle	Psoas
13	chr1:94427200-94429400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr1:94427200-94429800	Weak transcription	HSMMtube	muscle
15	chr1:94427200-94435200	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr1:94427400-94430400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:94427600-94429800	Weak transcription	NHEK	skin
18	chr1:94427800-94430400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
19	chr1:94427800-94430800	Weak transcription	Esophagus	oesophagus
20	chr1:94428400-94429400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:94428800-94429400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr1:94428800-94429600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr1:94428800-94430400	Flanking Active TSS	A549	lung
24	chr1:94428800-94430800	Flanking Active TSS	HepG2	liver
25	chr1:94428800-94431400	Enhancers	Osteobl	bone
26	chr1:94428800-94431600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:94429000-94430000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr1:94429000-94430000	Enhancers	Fetal Intestine Small	intestine
29	chr1:94429000-94431400	Enhancers	Stomach Mucosa	stomach
30	chr1:94429200-94429400	Enhancers	Fetal Intestine Large	intestine
31	chr1:94429200-94429400	Enhancers	Sigmoid Colon	Sigmoid Colon
32	chr1:94429200-94431000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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