Variant report
| Variant | rs7550775 |
|---|---|
| Chromosome Location | chr1:58685010-58685011 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10889087 | 0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs11207173 | 0.90[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs11207177 | 1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs1213758 | 0.83[AFR][1000 genomes];0.86[AMR][1000 genomes] |
| rs1213759 | 0.87[AMR][1000 genomes] |
| rs1416342 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2406590 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs2806397 | 0.83[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs4912183 | 0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4912302 | 0.83[EUR][1000 genomes] |
| rs4912312 | 0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs515683 | 0.84[AMR][1000 genomes] |
| rs533114 | 0.83[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs558475 | 0.81[EUR][1000 genomes] |
| rs602547 | 0.85[AMR][1000 genomes] |
| rs674913 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs674986 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs688010 | 0.86[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7529686 | 0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs7529800 | 0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs864250 | 0.81[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1015057 | chr1:57976993-58793962 | Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | nsv431379 | chr1:58224212-58802608 | Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv1008968 | chr1:58582159-58982440 | Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv534974 | chr1:58582159-58982440 | Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:58675800-58694800 | Weak transcription | Ovary | ovary |
| 2 | chr1:58682600-58686800 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
