Variant report

Variant	rs7550931
Chromosome Location	chr1:172904474-172904475
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:172501051..172503562-chr1:172903363..172904892,2	K562	blood:

Variant related genes	Relation type
ENSG00000094975	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10489275	0.96[YRI][hapmap];1.00[AMR][1000 genomes]
rs11799419	0.87[AFR][1000 genomes]
rs16845151	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16845159	0.82[AFR][1000 genomes]
rs16845169	1.00[AMR][1000 genomes]
rs4615873	1.00[AMR][1000 genomes]
rs6658802	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046026	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73046030	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73049845	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7416404	1.00[AMR][1000 genomes]
rs7524172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7548612	1.00[AMR][1000 genomes]
rs7550854	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:172900600-172906000	Enhancers	HUVEC	blood vessel
2	chr1:172900800-172904800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:172900800-172905000	Enhancers	Muscle Satellite Cultured Cells	--
4	chr1:172901600-172905200	Weak transcription	Spleen	Spleen
5	chr1:172901800-172904600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:172901800-172904600	Enhancers	HMEC	breast
7	chr1:172902200-172904800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:172902600-172908800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr1:172902800-172908800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:172903000-172904600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr1:172903600-172904600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr1:172903600-172904600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr1:172903600-172914200	Weak transcription	Aorta	Aorta
14	chr1:172903800-172904800	Enhancers	NHDF-Ad	bronchial
15	chr1:172903800-172905000	Weak transcription	Left Ventricle	heart
16	chr1:172903800-172908400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:172903800-172908400	Weak transcription	Fetal Stomach	stomach
18	chr1:172903800-172908600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr1:172904000-172905400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr1:172904000-172908600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:172904000-172909200	Weak transcription	Colon Smooth Muscle	Colon
22	chr1:172904000-172909400	Weak transcription	HSMMtube	muscle
23	chr1:172904200-172904600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr1:172904200-172905200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr1:172904200-172905600	Weak transcription	NHLF	lung
26	chr1:172904200-172906000	Enhancers	A549	lung
27	chr1:172904200-172908400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr1:172904200-172908800	Weak transcription	Placenta Amnion	Placenta Amnion
29	chr1:172904200-172909800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr1:172904400-172904600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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