Variant report

Variant	rs7551804
Chromosome Location	chr1:220376393-220376394
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr1:220376254-220376419	HepG2	liver:	n/a	chr1:220376338-220376352 chr1:220376340-220376356 chr1:220376340-220376355 chr1:220376343-220376357 chr1:220376335-220376355 chr1:220376344-220376355
2	MAFK	chr1:220376292-220376402	HepG2	liver:	n/a	chr1:220376338-220376352 chr1:220376340-220376356 chr1:220376340-220376355 chr1:220376343-220376357 chr1:220376335-220376355 chr1:220376344-220376355

Variant related genes	Relation type
SNORA36B	TF binding region
ENSG00000270585	TF binding region

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10863537	0.90[CEU][hapmap];0.82[CHB][hapmap];0.81[ASN][1000 genomes]
rs11118508	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12402633	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12404532	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs12404566	0.89[EUR][1000 genomes]
rs12409065	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12411242	0.87[EUR][1000 genomes]
rs12562531	0.86[ASN][1000 genomes]
rs12568267	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1511695	0.94[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17565134	0.88[EUR][1000 genomes]
rs2048477	0.82[EUR][1000 genomes]
rs3767654	0.89[CEU][hapmap]
rs3814345	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4351641	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56074233	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57557703	0.89[EUR][1000 genomes]
rs59681037	0.89[EUR][1000 genomes]
rs72747401	0.83[EUR][1000 genomes]
rs72749210	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7526460	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7541290	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7543828	0.82[EUR][1000 genomes]
rs866978	0.82[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220305400-220376600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:220325000-220398400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:220330800-220378600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:220345400-220391400	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr1:220348000-220386800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:220350000-220386200	Strong transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:220350600-220387800	Weak transcription	Stomach Mucosa	stomach
8	chr1:220350800-220378800	Weak transcription	Pancreas	Pancrea
9	chr1:220353200-220386600	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr1:220353800-220386400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr1:220354400-220386800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr1:220355400-220378600	Weak transcription	Gastric	stomach
13	chr1:220358000-220381600	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr1:220358000-220382000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr1:220358400-220377600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr1:220358600-220385800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr1:220359000-220385000	Strong transcription	Liver	Liver
18	chr1:220359200-220386000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:220359400-220376600	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr1:220359400-220377000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:220359400-220385800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr1:220359400-220386800	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr1:220359600-220378400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr1:220360200-220376400	Strong transcription	Primary B cells from peripheral blood	blood
25	chr1:220362800-220378600	Weak transcription	Small Intestine	intestine
26	chr1:220366000-220378600	Weak transcription	Spleen	Spleen
27	chr1:220366200-220378200	Weak transcription	A549	lung
28	chr1:220366200-220378600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr1:220366200-220392000	Weak transcription	Brain Angular Gyrus	brain
30	chr1:220366400-220378600	Weak transcription	Brain Substantia Nigra	brain
31	chr1:220366400-220379800	Weak transcription	Esophagus	oesophagus
32	chr1:220366600-220378400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr1:220366600-220378400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr1:220366600-220378400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr1:220366600-220378400	Weak transcription	Hela-S3	cervix
36	chr1:220366600-220378600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr1:220366800-220378400	Weak transcription	Colonic Mucosa	Colon
38	chr1:220366800-220378400	Weak transcription	HepG2	liver
39	chr1:220367000-220378600	Weak transcription	NHLF	lung
40	chr1:220368600-220378400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr1:220368600-220378400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr1:220368600-220378400	Weak transcription	HSMMtube	muscle
43	chr1:220368600-220383800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr1:220370000-220385200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:220370800-220376600	Strong transcription	Primary T cells from cord blood	blood
46	chr1:220370800-220376600	Strong transcription	Duodenum Smooth Muscle	Duodenum
47	chr1:220370800-220380400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
48	chr1:220371000-220376600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:220371000-220380400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:220371000-220380600	Strong transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links