Variant report

Variant	rs7552766
Chromosome Location	chr1:93413831-93413832
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:93412343..93413855-chr1:93425936..93428915,2	K562	blood:

Variant related genes	Relation type
ENSG00000154511	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10157869	1.00[JPT][hapmap]
rs10159030	1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs13373836	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13374961	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13374962	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131669	1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17131670	1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17131671	1.00[ASN][1000 genomes]
rs17131672	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131673	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17131674	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4394666	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[ASN][1000 genomes]
rs59078677	1.00[ASN][1000 genomes]
rs60165854	1.00[ASN][1000 genomes]
rs60684469	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61318253	1.00[ASN][1000 genomes]
rs7515224	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7519363	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7539571	1.00[JPT][hapmap];0.93[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9324345	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008602	chr1:93176811-93640808	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:93400400-93416600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:93400800-93421800	Weak transcription	Fetal Lung	lung
3	chr1:93406200-93415200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:93407600-93415400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:93409000-93415200	Weak transcription	A549	lung
6	chr1:93409000-93415400	Weak transcription	HSMMtube	muscle
7	chr1:93409200-93415200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr1:93409200-93415200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:93409200-93415200	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:93409200-93421200	Weak transcription	Fetal Brain Female	brain
11	chr1:93409400-93415200	Weak transcription	Stomach Mucosa	stomach
12	chr1:93409400-93415200	Weak transcription	NHDF-Ad	bronchial
13	chr1:93409400-93415400	Weak transcription	Osteobl	bone
14	chr1:93409600-93426000	Weak transcription	Lung	lung
15	chr1:93410600-93414000	Enhancers	Brain Hippocampus Middle	brain
16	chr1:93410600-93415400	Weak transcription	NHLF	lung
17	chr1:93410600-93415600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr1:93410600-93415600	Weak transcription	Right Ventricle	heart
19	chr1:93410600-93425600	Weak transcription	Aorta	Aorta
20	chr1:93410600-93425800	Weak transcription	Right Atrium	heart
21	chr1:93410600-93426000	Weak transcription	Left Ventricle	heart
22	chr1:93410800-93415400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr1:93410800-93415800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:93410800-93416000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr1:93410800-93416600	Weak transcription	Thymus	Thymus
26	chr1:93411000-93415200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr1:93411000-93422000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr1:93411000-93425800	Weak transcription	Primary hematopoietic stem cells	blood
29	chr1:93411200-93415400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr1:93411200-93415400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr1:93411400-93415200	Weak transcription	Primary monocytes fromperipheralblood	blood
32	chr1:93411400-93415200	Weak transcription	Adipose Nuclei	Adipose
33	chr1:93411400-93415200	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr1:93411400-93415200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr1:93411400-93415400	Weak transcription	Duodenum Smooth Muscle	Duodenum
36	chr1:93411400-93415400	Weak transcription	Small Intestine	intestine
37	chr1:93411400-93415400	Weak transcription	Dnd41	blood
38	chr1:93411400-93415600	Weak transcription	Fetal Heart	heart
39	chr1:93411400-93415600	Weak transcription	Fetal Thymus	thymus
40	chr1:93411400-93415600	Weak transcription	Rectal Smooth Muscle	rectum
41	chr1:93411400-93415800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr1:93411400-93416400	Enhancers	Primary B cells from cord blood	blood
43	chr1:93411400-93416600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr1:93411400-93416800	Weak transcription	Colon Smooth Muscle	Colon
45	chr1:93411400-93416800	Weak transcription	Psoas Muscle	Psoas
46	chr1:93411600-93415200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr1:93411600-93415400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
48	chr1:93412200-93415400	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr1:93412400-93415000	Weak transcription	HepG2	liver
50	chr1:93412400-93422000	Weak transcription	Liver	Liver

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