Variant report

Variant	rs7555818
Chromosome Location	chr1:210633518-210633519
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17016283	0.84[ASW][hapmap];0.95[LWK][hapmap];0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs17016287	0.85[YRI][hapmap];0.86[AFR][1000 genomes]
rs3753224	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4376	chr1:210627620-210672326	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210571400-210641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr1:210611600-210639600	Weak transcription	Aorta	Aorta
3	chr1:210614600-210641200	Weak transcription	Gastric	stomach
4	chr1:210620200-210637800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:210625800-210638800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr1:210626200-210650000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr1:210628400-210640800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:210630000-210641200	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:210630200-210641400	Weak transcription	Liver	Liver
10	chr1:210630600-210634200	Strong transcription	HSMMtube	muscle
11	chr1:210630600-210637800	Weak transcription	Left Ventricle	heart
12	chr1:210631000-210644200	Weak transcription	Fetal Muscle Leg	muscle
13	chr1:210631000-210653800	Weak transcription	Colon Smooth Muscle	Colon
14	chr1:210631200-210640200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:210632000-210639000	Weak transcription	Lung	lung
16	chr1:210633000-210633600	Enhancers	Brain Cingulate Gyrus	brain
17	chr1:210633000-210633800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr1:210633000-210638000	Weak transcription	HSMM	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links