Variant report

Variant	rs7555865
Chromosome Location	chr1:71283759-71283760
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10493479	0.85[ASN][1000 genomes]
rs10889887	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11209689	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11209696	0.86[ASN][1000 genomes]
rs11209704	0.87[ASN][1000 genomes]
rs11209710	0.86[CHB][hapmap]
rs12080803	0.85[ASN][1000 genomes]
rs12141856	0.89[CHB][hapmap];0.85[ASN][1000 genomes]
rs1325949	0.84[CEU][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1327458	0.85[ASN][1000 genomes]
rs1409978	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1536536	0.85[ASN][1000 genomes]
rs17131474	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1854150	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2148800	0.85[ASN][1000 genomes]
rs2260497	0.85[ASN][1000 genomes]
rs2421782	0.85[AMR][1000 genomes]
rs35897531	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35980659	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55947353	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs55958766	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs5702	0.84[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6664305	1.00[CEU][hapmap]
rs72669128	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7523175	0.85[ASN][1000 genomes]
rs7530738	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7539357	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7543182	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7547597	0.85[ASN][1000 genomes]
rs7555485	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7555874	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs959	0.84[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1845198	chr1:71274759-71514969	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:71283400-71286200	Enhancers	Fetal Heart	heart
2	chr1:71283600-71284000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:71283600-71284400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:71283600-71284600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:71283600-71285200	Enhancers	NHDF-Ad	bronchial
6	chr1:71283600-71286200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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