Variant report

Variant	rs7555914
Chromosome Location	chr1:94227775-94227776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94225633..94227882-chr1:94228603..94231021,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10489605	1.00[CHB][hapmap]
rs10874795	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165001	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165019	0.96[EUR][1000 genomes]
rs12076307	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12079584	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12239830	1.00[CHB][hapmap]
rs1467129	0.83[GIH][hapmap]
rs17110394	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17110408	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17304770	1.00[CHB][hapmap];0.88[CHD][hapmap];0.83[GIH][hapmap]
rs4526623	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4615846	0.93[EUR][1000 genomes]
rs61781049	0.96[ASN][1000 genomes]
rs61781051	0.96[ASN][1000 genomes]
rs61781053	0.96[ASN][1000 genomes]
rs61782452	0.89[EUR][1000 genomes]
rs6541394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6660794	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6671839	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689215	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6689746	1.00[CEU][hapmap];1.00[CHB][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6703468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs717913	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72967397	0.96[EUR][1000 genomes]
rs7523682	0.96[ASN][1000 genomes]
rs871436	0.83[GIH][hapmap]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94219800-94231600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:94220000-94254200	Weak transcription	Aorta	Aorta
3	chr1:94222400-94228200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr1:94223000-94237000	Weak transcription	NHEK	skin
5	chr1:94223600-94229200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:94224800-94228000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr1:94225000-94231800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr1:94225000-94233600	Weak transcription	Right Atrium	heart
9	chr1:94225400-94231600	Weak transcription	Thymus	Thymus
10	chr1:94225600-94230400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:94225600-94233600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr1:94225600-94233800	Weak transcription	Fetal Lung	lung
13	chr1:94226400-94230200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:94226600-94228800	Weak transcription	Placenta	Placenta
15	chr1:94227000-94228400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr1:94227000-94231800	Weak transcription	HepG2	liver
17	chr1:94227200-94233600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr1:94227600-94229200	Strong transcription	HMEC	breast

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