Variant report

Variant	rs7556040
Chromosome Location	chr1:220626220-220626221
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12562165	0.86[CHB][hapmap]
rs12562172	0.86[CHB][hapmap]
rs12562686	0.85[JPT][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12568872	0.86[CHB][hapmap]
rs12568969	0.85[JPT][hapmap]
rs17007796	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1933881	0.85[JPT][hapmap]
rs57827085	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58913447	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58948810	0.95[AFR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60807411	0.95[AFR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6685446	0.85[JPT][hapmap]
rs6686532	0.82[EUR][1000 genomes]
rs7516373	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7522502	0.86[CHB][hapmap];0.85[JPT][hapmap]
rs7530302	0.85[CHB][hapmap];0.85[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7553380	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7555789	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220620600-220626800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:220624600-220627000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:220624600-220627000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr1:220624600-220627000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr1:220624800-220629000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:220625200-220629000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr1:220626200-220626400	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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