Variant report

Variant	rs7556280
Chromosome Location	chr1:220689122-220689123
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10863557	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118564	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11118565	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11118566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11118567	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11118570	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11118573	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11588721	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12047297	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12408540	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12737023	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1933001	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1933007	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2095669	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2244448	0.81[EUR][1000 genomes]
rs2589581	0.82[EUR][1000 genomes]
rs2589586	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2589589	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2786598	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2786610	0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2786617	0.82[EUR][1000 genomes]
rs35287074	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3753873	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3753874	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3860322	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4846326	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4846650	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4846653	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4846655	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6541154	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6675368	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9430949	0.81[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220683200-220689800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:220685200-220689400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:220685600-220689200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:220685800-220689400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr1:220686800-220689200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:220687200-220691000	Enhancers	HMEC	breast
7	chr1:220687400-220690400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:220687400-220691000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:220688400-220690600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:220688800-220689400	Flanking Active TSS	NHEK	skin
11	chr1:220688800-220690400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr1:220689000-220690000	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr1:220689000-220690200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr1:220689000-220690200	Enhancers	HUES64 Cell Line	embryonic stem cell

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