Variant report

Variant	rs7556904
Chromosome Location	chr2:37562990-37562991
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10170761	1.00[ASN][1000 genomes]
rs1017159	1.00[ASN][1000 genomes]
rs10174658	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197287	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197856	1.00[ASN][1000 genomes]
rs11124571	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11124572	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11883585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11886853	1.00[ASN][1000 genomes]
rs11890709	1.00[ASN][1000 genomes]
rs11890754	1.00[ASN][1000 genomes]
rs11896614	1.00[ASN][1000 genomes]
rs11897904	1.00[ASN][1000 genomes]
rs11899003	1.00[ASN][1000 genomes]
rs11902292	1.00[ASN][1000 genomes]
rs13384958	1.00[ASN][1000 genomes]
rs13392784	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399143	1.00[ASN][1000 genomes]
rs13401288	1.00[ASN][1000 genomes]
rs13401291	1.00[ASN][1000 genomes]
rs13404663	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13409402	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414561	1.00[ASN][1000 genomes]
rs13422798	1.00[ASN][1000 genomes]
rs13424642	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426217	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426239	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13426346	1.00[ASN][1000 genomes]
rs13426780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429945	1.00[ASN][1000 genomes]
rs17410072	1.00[ASN][1000 genomes]
rs2110966	1.00[ASN][1000 genomes]
rs2110967	1.00[ASN][1000 genomes]
rs2192945	1.00[ASN][1000 genomes]
rs28655786	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28698067	1.00[ASN][1000 genomes]
rs28710795	1.00[ASN][1000 genomes]
rs34149238	1.00[ASN][1000 genomes]
rs4398251	1.00[ASN][1000 genomes]
rs59712801	1.00[ASN][1000 genomes]
rs62133321	1.00[ASN][1000 genomes]
rs62133324	1.00[ASN][1000 genomes]
rs6711685	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715050	1.00[ASN][1000 genomes]
rs6726768	1.00[ASN][1000 genomes]
rs6726921	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727087	1.00[ASN][1000 genomes]
rs6727253	1.00[ASN][1000 genomes]
rs6730342	1.00[ASN][1000 genomes]
rs6733861	1.00[ASN][1000 genomes]
rs6748019	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749793	1.00[ASN][1000 genomes]
rs6750015	1.00[ASN][1000 genomes]
rs6752475	1.00[ASN][1000 genomes]
rs6754376	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754750	1.00[ASN][1000 genomes]
rs6755577	1.00[ASN][1000 genomes]
rs6761515	1.00[ASN][1000 genomes]
rs72792882	1.00[ASN][1000 genomes]
rs7556959	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7558593	1.00[ASN][1000 genomes]
rs7559558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7573871	0.88[AMR][1000 genomes]
rs7582067	1.00[ASN][1000 genomes]
rs7590736	1.00[ASN][1000 genomes]
rs759460	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7598671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs888098	1.00[ASN][1000 genomes]
rs888099	1.00[ASN][1000 genomes]
rs9309005	1.00[ASN][1000 genomes]
rs9309006	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37562200-37563200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr2:37562400-37563600	Enhancers	Monocytes-CD14+_RO01746	blood

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