Variant report

Variant	rs7559558
Chromosome Location	chr2:37565184-37565185
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:37550944..37553103-chr2:37564333..37566233,2	K562	blood:

Variant related genes	Relation type
ENSG00000115825	Chromatin interaction
ENSG00000232028	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10170761	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[ASN][1000 genomes]
rs1017159	1.00[ASN][1000 genomes]
rs10174658	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197287	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10197856	1.00[ASN][1000 genomes]
rs11124571	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11124572	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11883585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11886853	1.00[ASN][1000 genomes]
rs11890709	1.00[ASN][1000 genomes]
rs11890754	1.00[ASN][1000 genomes]
rs11892108	1.00[CHB][hapmap]
rs11896614	1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs11897904	1.00[ASN][1000 genomes]
rs11899003	1.00[ASN][1000 genomes]
rs11902292	1.00[ASN][1000 genomes]
rs13384958	1.00[ASN][1000 genomes]
rs13392784	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13399143	1.00[ASN][1000 genomes]
rs13401288	1.00[ASN][1000 genomes]
rs13401291	1.00[ASN][1000 genomes]
rs13404663	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13409402	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13414561	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13422798	1.00[ASN][1000 genomes]
rs13424642	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426217	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13426239	0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13426346	1.00[ASN][1000 genomes]
rs13426780	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13429945	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17410072	1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2110966	1.00[ASN][1000 genomes]
rs2110967	1.00[ASN][1000 genomes]
rs2192945	1.00[ASN][1000 genomes]
rs2300887	0.81[CEU][hapmap];0.81[TSI][hapmap]
rs2307472	1.00[CHB][hapmap]
rs2307483	1.00[CHB][hapmap]
rs2373114	1.00[CHB][hapmap]
rs28655786	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28698067	1.00[ASN][1000 genomes]
rs28710795	1.00[ASN][1000 genomes]
rs34149238	1.00[ASN][1000 genomes]
rs4398251	1.00[ASN][1000 genomes]
rs4648150	1.00[CHB][hapmap]
rs4648153	1.00[CHB][hapmap]
rs4648156	1.00[CHB][hapmap]
rs4648166	1.00[CHB][hapmap]
rs4648169	1.00[CHB][hapmap]
rs4648170	1.00[CHB][hapmap]
rs4648171	1.00[CHB][hapmap]
rs4648175	1.00[CHB][hapmap]
rs59712801	1.00[ASN][1000 genomes]
rs62133321	1.00[ASN][1000 genomes]
rs62133324	1.00[ASN][1000 genomes]
rs6711685	0.80[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6715050	1.00[ASN][1000 genomes]
rs6726768	1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs6726921	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6727087	1.00[ASN][1000 genomes]
rs6727253	1.00[ASN][1000 genomes]
rs6730342	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs6733861	1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs6748019	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6749793	1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs6750015	1.00[ASN][1000 genomes]
rs6752475	1.00[ASN][1000 genomes]
rs6754376	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6754750	1.00[ASN][1000 genomes]
rs6755577	1.00[ASN][1000 genomes]
rs6761515	1.00[ASN][1000 genomes]
rs72792882	1.00[ASN][1000 genomes]
rs7556904	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7556959	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7558593	1.00[ASN][1000 genomes]
rs7573871	0.88[AMR][1000 genomes]
rs7582067	1.00[ASN][1000 genomes]
rs7590736	1.00[ASN][1000 genomes]
rs759460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759668	1.00[CHB][hapmap]
rs7598671	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs888098	1.00[ASN][1000 genomes]
rs888099	1.00[ASN][1000 genomes]
rs9309005	1.00[CHB][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs9309006	0.82[CEU][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37564400-37565200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr2:37564400-37565600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:37564400-37565800	Enhancers	Placenta	Placenta
4	chr2:37564800-37565200	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr2:37564800-37565600	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:37565000-37565600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr2:37565000-37565800	Enhancers	Placenta Amnion	Placenta Amnion
8	chr2:37565000-37566200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:37565000-37566400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr2:37565000-37566400	Enhancers	Primary monocytes fromperipheralblood	blood

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