Variant report

Variant	rs756170
Chromosome Location	chr4:142051588-142051589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10008705	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs10016770	0.91[ASN][1000 genomes]
rs10029478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs12509440	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs13435125	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs1395668	0.89[ASN][1000 genomes]
rs1395669	0.89[ASN][1000 genomes]
rs1873370	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2321862	0.89[ASN][1000 genomes]
rs28417061	0.98[ASN][1000 genomes]
rs28457672	0.98[ASN][1000 genomes]
rs28628800	0.98[ASN][1000 genomes]
rs28667926	0.86[ASN][1000 genomes]
rs4267811	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs4386678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4613644	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4629541	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs4956512	0.88[ASN][1000 genomes]
rs4956513	0.89[ASN][1000 genomes]
rs4956514	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]
rs4956515	0.98[ASN][1000 genomes]
rs4956516	0.98[ASN][1000 genomes]
rs4956517	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs6537030	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6813119	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs6817313	0.89[ASN][1000 genomes]
rs6826231	0.89[ASN][1000 genomes]
rs6831578	0.89[ASN][1000 genomes]
rs6853785	0.91[ASN][1000 genomes]
rs7658695	0.89[ASN][1000 genomes]
rs7669929	0.93[ASN][1000 genomes]
rs9790672	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs9790673	1.00[CHB][hapmap];0.86[JPT][hapmap];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880167	chr4:141616979-142092124	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv880170	chr4:142046828-142137165	Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv526770	chr4:142048547-142061946	Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:142038600-142052600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:142039400-142051800	Weak transcription	Aorta	Aorta
3	chr4:142041000-142052200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr4:142043600-142051800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr4:142044600-142051600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr4:142044800-142051800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr4:142048200-142051800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr4:142048400-142053000	Weak transcription	Pancreas	Pancrea
9	chr4:142048800-142055600	Active TSS	Right Ventricle	heart
10	chr4:142049000-142052400	Weak transcription	Brain Substantia Nigra	brain
11	chr4:142049600-142051800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:142049600-142052200	Weak transcription	Psoas Muscle	Psoas
13	chr4:142050400-142051800	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr4:142050400-142054800	Active TSS	Stomach Smooth Muscle	stomach
15	chr4:142050600-142051600	Enhancers	Fetal Muscle Leg	muscle
16	chr4:142050600-142052000	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr4:142050600-142053000	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr4:142050600-142054800	Active TSS	Brain Anterior Caudate	brain
19	chr4:142050600-142054800	Active TSS	Right Atrium	heart
20	chr4:142050600-142055800	Active TSS	Left Ventricle	heart
21	chr4:142050800-142053000	Weak transcription	Spleen	Spleen
22	chr4:142051000-142052400	Active TSS	Duodenum Smooth Muscle	Duodenum
23	chr4:142051000-142052400	Active TSS	Fetal Brain Female	brain
24	chr4:142051000-142054800	Active TSS	Pancreatic Islets	Pancreatic Islet
25	chr4:142051200-142051600	Flanking Active TSS	Fetal Brain Male	brain
26	chr4:142051200-142051800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:142051200-142053000	Active TSS	Fetal Muscle Trunk	muscle
28	chr4:142051200-142053000	Active TSS	Fetal Stomach	stomach
29	chr4:142051200-142053000	Active TSS	Rectal Smooth Muscle	rectum
30	chr4:142051200-142053400	Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr4:142051200-142055400	Active TSS	Brain Inferior Temporal Lobe	brain
32	chr4:142051400-142051600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:142051400-142051600	Active TSS	Brain Angular Gyrus	brain
34	chr4:142051400-142051800	Enhancers	Brain Germinal Matrix	brain
35	chr4:142051400-142051800	Flanking Active TSS	Osteobl	bone
36	chr4:142051400-142052000	Bivalent Enhancer	Fetal Lung	lung
37	chr4:142051400-142052200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:142051400-142052400	Active TSS	Adipose Nuclei	Adipose
39	chr4:142051400-142052400	Active TSS	Fetal Intestine Small	intestine
40	chr4:142051400-142052800	Active TSS	NHDF-Ad	bronchial
41	chr4:142051400-142053000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr4:142051400-142053200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
43	chr4:142051400-142053200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
44	chr4:142051400-142054000	Active TSS	Fetal Heart	heart
45	chr4:142051400-142054800	Active TSS	Colon Smooth Muscle	Colon
46	chr4:142051400-142054800	Active TSS	Ovary	ovary
47	chr4:142051400-142055400	Active TSS	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links