Variant report

Variant	rs7566718
Chromosome Location	chr2:63960478-63960479
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12473342	0.86[ASN][1000 genomes]
rs17028100	0.86[ASN][1000 genomes]
rs17619598	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17619855	0.84[AFR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34714807	0.86[ASN][1000 genomes]
rs6730863	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834242	chr2:63891249-64045617	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:63955600-63963600	Weak transcription	Aorta	Aorta
2	chr2:63955600-63964200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:63956800-63962400	Weak transcription	Psoas Muscle	Psoas
4	chr2:63957200-63960800	Weak transcription	A549	lung
5	chr2:63957400-63968200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr2:63957400-63971200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:63957600-63960600	Weak transcription	HepG2	liver
8	chr2:63959600-63961200	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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