Variant report

Variant	rs7568510
Chromosome Location	chr2:37555102-37555103
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA3	chr2:37554202-37555177	SK-N-SH	brain:	n/a	chr2:37554961-37554970 chr2:37554275-37554292 chr2:37554279-37554300 chr2:37554286-37554297

No.	Distal block	Cell Line	Cell type
1	chr2:37545726..37548175-chr2:37554305..37557162,2	K562	blood:
2	chr2:37543073..37544935-chr2:37554432..37557348,2	K562	blood:
3	chr2:37549953..37551637-chr2:37554820..37556399,2	K562	blood:
4	chr2:37553880..37556117-chr2:37565295..37568146,2	K562	blood:

Variant related genes	Relation type
PRKD3	TF binding region
ENSG00000115825	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10177176	0.84[ASN][1000 genomes]
rs10190959	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11124574	0.82[ASN][1000 genomes]
rs11124578	0.90[ASN][1000 genomes]
rs1158218	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1158219	0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11682607	0.88[AFR][1000 genomes];0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11683872	0.89[AFR][1000 genomes]
rs11685805	0.81[ASN][1000 genomes]
rs11689794	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11893943	0.81[ASN][1000 genomes]
rs12616151	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12618410	0.85[ASN][1000 genomes]
rs12712532	0.96[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13015451	0.96[AFR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13030789	0.95[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs17020479	0.83[AFR][1000 genomes]
rs17020490	0.85[ASN][1000 genomes]
rs1989172	0.82[ASN][1000 genomes]
rs2041836	0.85[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2268987	0.85[ASN][1000 genomes]
rs2300881	0.87[ASN][1000 genomes]
rs2300884	0.83[ASN][1000 genomes]
rs2372993	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34819784	0.84[AFR][1000 genomes]
rs3770757	0.88[ASN][1000 genomes]
rs3770759	0.84[ASN][1000 genomes]
rs4670194	0.89[ASN][1000 genomes]
rs4670195	0.89[ASN][1000 genomes]
rs4670688	0.87[ASN][1000 genomes]
rs4670689	0.88[ASN][1000 genomes]
rs56774710	0.91[ASN][1000 genomes]
rs57361399	0.85[ASN][1000 genomes]
rs6544066	0.87[ASN][1000 genomes]
rs67467920	0.85[ASN][1000 genomes]
rs71398224	0.85[ASN][1000 genomes]
rs74177070	0.93[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs7563610	0.87[ASN][1000 genomes]
rs7570547	0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7584565	0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9309004	0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430724	chr2:37546820-37628704	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv2685	chr2:37550096-37594923	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7568510	CEBPZ	cis	Nerve Tibial	GTEx
rs7568510	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs7568510	CEBPZ	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37553000-37555200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:37553800-37562200	Weak transcription	Primary monocytes fromperipheralblood	blood
3	chr2:37554000-37557800	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr2:37554800-37555200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr2:37555000-37555200	Enhancers	Small Intestine	intestine

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