Variant report

Variant	rs7570299
Chromosome Location	chr2:55684956-55684957
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10174532	0.85[ASN][1000 genomes]
rs10206363	0.88[ASN][1000 genomes]
rs1037509	0.86[CHB][hapmap];0.85[JPT][hapmap];0.96[ASN][1000 genomes]
rs11125575	0.84[ASN][1000 genomes]
rs11125578	0.92[ASN][1000 genomes]
rs11694644	0.87[CEU][hapmap]
rs11884094	0.87[ASN][1000 genomes]
rs12620109	0.88[CEU][hapmap]
rs12999476	0.87[ASN][1000 genomes]
rs13399420	0.83[ASN][1000 genomes]
rs13412745	0.82[ASN][1000 genomes]
rs1454425	0.95[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs4671245	0.98[ASN][1000 genomes]
rs4672046	0.98[ASN][1000 genomes]
rs6545500	0.93[ASN][1000 genomes]
rs6545501	0.91[CHB][hapmap];0.88[ASN][1000 genomes]
rs6716100	0.81[CEU][hapmap]
rs6719033	0.91[CHB][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs6724457	0.89[ASN][1000 genomes]
rs7567744	0.91[CHB][hapmap];0.93[ASN][1000 genomes]
rs7570226	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7593229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7600034	0.86[YRI][hapmap]
rs7600456	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs897095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs897096	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs897097	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006170	chr2:55530179-55809251	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv520581	chr2:55622825-55903016	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv1802545	chr2:55668771-55687618	Enhancers Active TSS Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55684400-55685000	Enhancers	K562	blood

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