Variant report

Variant	rs7574127
Chromosome Location	chr2:56011107-56011108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:56005948..56008265-chr2:56009209..56011349,2	MCF-7	breast:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10496052	0.83[AMR][1000 genomes]
rs11125606	0.85[AMR][1000 genomes]
rs12464737	0.81[AMR][1000 genomes]
rs12478566	0.91[ASN][1000 genomes]
rs12615158	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1344732	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1346781	0.83[ASN][1000 genomes]
rs1346783	0.85[ASN][1000 genomes]
rs1346790	0.81[ASN][1000 genomes]
rs1367225	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1430189	0.86[ASN][1000 genomes]
rs1430190	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1430191	0.85[ASN][1000 genomes]
rs1430203	0.85[ASN][1000 genomes]
rs17047234	0.81[AMR][1000 genomes]
rs17369648	0.83[AMR][1000 genomes]
rs1897114	0.81[ASN][1000 genomes]
rs1946545	0.81[AMR][1000 genomes]
rs1960050	0.86[ASN][1000 genomes]
rs1985160	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1985162	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2009262	0.86[AMR][1000 genomes]
rs2052933	0.86[ASN][1000 genomes]
rs2115876	0.88[ASN][1000 genomes]
rs2115878	0.88[ASN][1000 genomes]
rs4355154	0.88[ASN][1000 genomes]
rs4672074	0.85[ASN][1000 genomes]
rs58027672	0.83[AMR][1000 genomes]
rs59556444	0.85[AMR][1000 genomes]
rs62167713	0.82[AMR][1000 genomes]
rs6545523	0.81[ASN][1000 genomes]
rs6545526	0.85[ASN][1000 genomes]
rs6708796	0.88[ASN][1000 genomes]
rs6712017	0.86[ASN][1000 genomes]
rs6714513	0.86[ASN][1000 genomes]
rs6724369	0.81[AMR][1000 genomes]
rs6733730	0.85[ASN][1000 genomes]
rs6749785	0.88[ASN][1000 genomes]
rs6751403	0.86[ASN][1000 genomes]
rs6753814	0.86[ASN][1000 genomes]
rs6757057	0.86[ASN][1000 genomes]
rs72618677	0.88[ASN][1000 genomes]
rs732132	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7560657	0.81[AMR][1000 genomes]
rs7572523	0.88[ASN][1000 genomes]
rs7609520	0.85[ASN][1000 genomes]
rs934278	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv999962	chr2:55976574-56011517	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv997683	chr2:55976574-56013875	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv431080	chr2:55988293-56011517	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:55989400-56015000	Weak transcription	Aorta	Aorta
2	chr2:56009800-56011600	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:56010200-56012800	Weak transcription	Brain Anterior Caudate	brain
4	chr2:56010600-56013200	Weak transcription	A549	lung
5	chr2:56010600-56013800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:56010600-56013800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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