Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1009018	1.00[AFR][1000 genomes]
rs10873248	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11158929	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1978226	1.00[AFR][1000 genomes]
rs2052014	0.88[EUR][1000 genomes]
rs2190868	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2190870	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2190871	0.90[ASN][1000 genomes]
rs2877776	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899414	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902967	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4902968	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs4902969	0.90[ASN][1000 genomes]
rs4902970	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs758235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003097	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8004427	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs8014500	1.00[AFR][1000 genomes]
rs8017353	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs917392	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530794	chr14:72113818-73034008	Enhancers Bivalent/Poised TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
2	nsv948800	chr14:72462557-73150701	Enhancers Bivalent Enhancer Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:72481000-72481600	Enhancers	Brain Cingulate Gyrus	brain
2	chr14:72481000-72481600	Enhancers	Brain Hippocampus Middle	brain
3	chr14:72481000-72489200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr14:72481200-72481600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:72481200-72481800	Enhancers	Brain Substantia Nigra	brain

Quick Search: