Variant report

Variant	rs7577307
Chromosome Location	chr2:180581128-180581129
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12052765	0.86[CEU][hapmap]
rs12053119	0.86[CEU][hapmap]
rs12465379	0.86[CEU][hapmap]
rs12473571	0.86[CEU][hapmap]
rs1385972	0.86[CEU][hapmap]
rs16866944	0.81[CEU][hapmap]
rs16866945	0.81[CEU][hapmap]
rs16866953	0.81[CEU][hapmap]
rs16866963	0.86[CEU][hapmap]
rs16866986	0.86[CEU][hapmap]
rs16866991	0.86[CEU][hapmap]
rs16866992	0.85[CEU][hapmap]
rs55827823	1.00[AFR][1000 genomes]
rs7592797	0.86[CEU][hapmap]
rs7607561	0.86[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002305	chr2:180568558-180812846	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180572600-180582200	Weak transcription	Right Atrium	heart
2	chr2:180580600-180581600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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