Variant report

Variant	rs7578322
Chromosome Location	chr2:181973932-181973933
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10173932	1.00[AMR][1000 genomes]
rs10186141	1.00[AMR][1000 genomes]
rs10200804	1.00[AMR][1000 genomes]
rs55660649	0.86[EUR][1000 genomes]
rs55699373	1.00[EUR][1000 genomes]
rs55854201	1.00[EUR][1000 genomes]
rs55934533	1.00[EUR][1000 genomes]
rs56066931	1.00[EUR][1000 genomes]
rs56184714	1.00[EUR][1000 genomes]
rs56208112	1.00[EUR][1000 genomes]
rs56227816	0.86[EUR][1000 genomes]
rs56252601	0.86[EUR][1000 genomes]
rs56298450	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56329092	1.00[EUR][1000 genomes]
rs56347806	1.00[EUR][1000 genomes]
rs6741600	0.93[EUR][1000 genomes]
rs6742878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6745557	1.00[EUR][1000 genomes]
rs6755739	0.86[EUR][1000 genomes]
rs73976824	1.00[EUR][1000 genomes]
rs73976835	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431824	chr2:181946115-182118559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1005870	chr2:181968637-182921439	Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv536063	chr2:181968637-182921439	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:181969000-181974600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr2:181969200-181974200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr2:181969400-181974000	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr2:181969400-181974200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr2:181970800-181974000	Enhancers	Primary T cells fromperipheralblood	blood
6	chr2:181972400-181975200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:181972400-181976400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr2:181973800-181985000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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