Variant report

Variant	rs7580473
Chromosome Location	chr2:11658972-11658973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13383410	0.99[EUR][1000 genomes]
rs13395155	0.97[EUR][1000 genomes]
rs13407457	0.99[EUR][1000 genomes]
rs13407702	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13418262	0.99[EUR][1000 genomes]
rs13424905	0.94[EUR][1000 genomes]
rs13430148	0.98[EUR][1000 genomes]
rs13432124	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13432756	0.97[EUR][1000 genomes]
rs16857565	0.99[EUR][1000 genomes]
rs61362255	0.99[EUR][1000 genomes]
rs73187472	0.99[EUR][1000 genomes]
rs7597108	0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11647000-11664400	Weak transcription	Right Ventricle	heart
2	chr2:11647000-11665800	Weak transcription	Right Atrium	heart
3	chr2:11654000-11664000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr2:11654800-11664400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:11655400-11664000	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr2:11656000-11660400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr2:11656200-11661400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr2:11656200-11671000	Weak transcription	Fetal Muscle Leg	muscle
9	chr2:11656200-11672800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr2:11657200-11663200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr2:11657400-11659800	Weak transcription	Fetal Stomach	stomach
12	chr2:11657600-11663800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:11657800-11659400	Weak transcription	HepG2	liver
14	chr2:11657800-11659600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr2:11658200-11659600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr2:11658400-11659000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr2:11658600-11659800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:11658800-11660400	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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