Variant report

Variant	rs7582381
Chromosome Location	chr2:56085261-56085262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11674409	0.93[ASN][1000 genomes]
rs11682872	0.87[EUR][1000 genomes]
rs11687955	0.95[ASN][1000 genomes]
rs11688992	0.90[CEU][hapmap];0.91[EUR][1000 genomes]
rs11691041	0.98[EUR][1000 genomes]
rs11691472	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs11693381	0.91[EUR][1000 genomes]
rs11694213	0.95[ASN][1000 genomes]
rs1367230	0.98[ASN][1000 genomes]
rs17047262	0.95[ASN][1000 genomes]
rs17047302	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17278665	1.00[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs2163238	0.95[EUR][1000 genomes]
rs28789713	0.89[EUR][1000 genomes]
rs4671258	0.81[CEU][hapmap]
rs4671261	0.91[EUR][1000 genomes]
rs4671262	0.93[ASN][1000 genomes]
rs55916998	0.95[EUR][1000 genomes]
rs55987978	0.93[EUR][1000 genomes]
rs56102096	0.95[EUR][1000 genomes]
rs57233927	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs59504093	0.95[EUR][1000 genomes]
rs60693760	0.95[EUR][1000 genomes]
rs6545528	0.93[ASN][1000 genomes]
rs6545529	0.98[ASN][1000 genomes]
rs6705051	0.89[EUR][1000 genomes]
rs6719384	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6726181	0.95[ASN][1000 genomes]
rs6735306	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs72805673	0.91[EUR][1000 genomes]
rs72805674	0.91[EUR][1000 genomes]
rs72805675	0.91[EUR][1000 genomes]
rs72807714	0.95[EUR][1000 genomes]
rs72807727	0.95[EUR][1000 genomes]
rs72807728	0.95[EUR][1000 genomes]
rs72807744	0.95[EUR][1000 genomes]
rs72807749	0.98[ASN][1000 genomes]
rs72807754	0.98[ASN][1000 genomes]
rs7563085	0.91[CEU][hapmap];0.87[EUR][1000 genomes]
rs7565703	0.98[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs7581441	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531374	chr2:55653723-56299784	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:56071600-56086800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:56079000-56088600	Weak transcription	Fetal Lung	lung
3	chr2:56082400-56085400	Enhancers	HMEC	breast
4	chr2:56082600-56085400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr2:56082600-56086000	Enhancers	NHEK	skin
6	chr2:56082600-56086400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr2:56082800-56085600	Enhancers	Osteobl	bone
8	chr2:56083200-56088600	Weak transcription	Ovary	ovary
9	chr2:56083400-56088800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr2:56084200-56086000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr2:56084200-56086200	Enhancers	HUVEC	blood vessel
12	chr2:56084200-56088600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr2:56084400-56087000	Weak transcription	Placenta	Placenta
14	chr2:56084400-56088600	Weak transcription	Aorta	Aorta
15	chr2:56084600-56086000	Weak transcription	HSMM	muscle
16	chr2:56084600-56087800	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr2:56084600-56087800	Weak transcription	NHLF	lung
18	chr2:56084600-56088600	Weak transcription	NH-A	brain
19	chr2:56084800-56088600	Weak transcription	Adipose Nuclei	Adipose
20	chr2:56085000-56086200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr2:56085000-56086400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr2:56085200-56086800	Weak transcription	Hela-S3	cervix
23	chr2:56085200-56088600	Weak transcription	A549	lung

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