Variant report

Variant	rs7584175
Chromosome Location	chr2:11599805-11599806
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:11590776..11592328-chr2:11597305..11600154,2	MCF-7	breast:
2	chr2:11584170..11586792-chr2:11598194..11600581,2	MCF-7	breast:
3	chr2:11593105..11594896-chr2:11598132..11599840,2	K562	blood:
4	chr2:11598034..11601167-chr2:11604377..11607233,5	K562	blood:

Variant related genes	Relation type
ENSG00000169016	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10186511	0.99[ASN][1000 genomes]
rs10929740	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10929741	0.84[ASN][1000 genomes]
rs10929742	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11680919	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11685543	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11686138	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687178	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11687681	0.94[ASN][1000 genomes]
rs11691211	0.82[EUR][1000 genomes]
rs11693023	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11694857	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12472962	1.00[ASN][1000 genomes]
rs12611958	0.92[AFR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12612948	0.84[EUR][1000 genomes]
rs12614218	0.82[EUR][1000 genomes]
rs12615317	0.81[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12617534	0.82[EUR][1000 genomes]
rs12988106	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12995996	0.84[EUR][1000 genomes]
rs34514099	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35306821	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35423645	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35727311	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35818376	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4292073	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4491705	0.83[ASN][1000 genomes]
rs4553788	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61016299	0.92[AFR][1000 genomes];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432193	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6432195	0.83[ASN][1000 genomes]
rs6432196	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6729114	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6751915	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7425786	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7556984	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9789694	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010506	chr2:11430965-12057286	Enhancers Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
2	nsv535585	chr2:11430965-12057286	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	88 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:11577600-11603800	Weak transcription	Colonic Mucosa	Colon
2	chr2:11579000-11604800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr2:11580200-11604000	Weak transcription	Fetal Brain Male	brain
4	chr2:11587200-11605400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr2:11587400-11605200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr2:11587600-11602200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr2:11587600-11603800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr2:11587600-11605400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr2:11589000-11604800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr2:11589200-11605400	Weak transcription	Thymus	Thymus
11	chr2:11589400-11605400	Weak transcription	Fetal Kidney	kidney
12	chr2:11589600-11603200	Weak transcription	Spleen	Spleen
13	chr2:11589600-11605400	Weak transcription	Esophagus	oesophagus
14	chr2:11589800-11603800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:11590000-11604000	Weak transcription	Brain Germinal Matrix	brain
16	chr2:11590200-11603800	Weak transcription	Small Intestine	intestine
17	chr2:11590200-11604800	Weak transcription	Primary B cells from cord blood	blood
18	chr2:11590200-11605400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr2:11591600-11603800	Weak transcription	Aorta	Aorta
20	chr2:11592000-11603800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:11592000-11603800	Weak transcription	Fetal Intestine Small	intestine
22	chr2:11592400-11601200	Weak transcription	Lung	lung
23	chr2:11592400-11603000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:11592600-11603800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr2:11593400-11605400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr2:11593600-11602600	Weak transcription	Fetal Brain Female	brain
27	chr2:11593600-11603400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr2:11593800-11602600	Weak transcription	Fetal Lung	lung
29	chr2:11593800-11605000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr2:11593800-11605200	Weak transcription	Rectal Mucosa Donor 29	rectum
31	chr2:11594000-11603400	Weak transcription	Placenta	Placenta
32	chr2:11594000-11605000	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr2:11594000-11605200	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr2:11594200-11603200	Weak transcription	Osteobl	bone
35	chr2:11594200-11605000	Weak transcription	Primary B cells from peripheral blood	blood
36	chr2:11594200-11605000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr2:11594600-11604800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
38	chr2:11595200-11604200	Weak transcription	NHDF-Ad	bronchial
39	chr2:11595200-11605000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr2:11595400-11603400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
41	chr2:11595600-11602600	Weak transcription	Primary T helper cells fromperipheralblood	blood
42	chr2:11595600-11603200	Weak transcription	Fetal Intestine Large	intestine
43	chr2:11595600-11605200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr2:11596200-11602000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr2:11596200-11602600	Weak transcription	HUVEC	blood vessel
46	chr2:11596600-11602400	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr2:11596600-11603800	Weak transcription	Fetal Stomach	stomach
48	chr2:11596600-11604200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr2:11596800-11602200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr2:11596800-11602800	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links