Variant report

Variant	rs7589296
Chromosome Location	chr2:37460700-37460701
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:37458143..37460778-chr2:37473170..37474857,2	MCF-7	breast:
2	chr2:37460312..37461934-chr2:37492568..37495549,2	K562	blood:
3	chr2:37458068..37462101-chr2:37468406..37471417,5	K562	blood:

Variant related genes	Relation type
ENSG00000003509	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10176949	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10177176	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10182759	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10190959	0.81[AMR][1000 genomes]
rs10209937	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10865123	0.85[EUR][1000 genomes]
rs11124569	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11124574	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1137437	0.86[EUR][1000 genomes]
rs1137453	0.86[EUR][1000 genomes]
rs1158218	0.83[AMR][1000 genomes]
rs1158219	0.83[AMR][1000 genomes]
rs11679617	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11680401	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11683872	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11685805	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11689794	0.82[AMR][1000 genomes]
rs11893943	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12616151	0.83[AMR][1000 genomes]
rs12618410	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12993090	0.86[EUR][1000 genomes]
rs13015451	0.82[AMR][1000 genomes]
rs17038876	0.81[AFR][1000 genomes]
rs2041836	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2268990	0.93[EUR][1000 genomes]
rs2287093	0.85[EUR][1000 genomes]
rs2300893	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2888434	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3213745	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34819784	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs3755195	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3770759	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4998429	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6743782	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs74177070	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7570547	0.83[AMR][1000 genomes]
rs7584565	0.83[AMR][1000 genomes]
rs9309004	0.81[AMR][1000 genomes]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs7589296	RP11-423P10.2	cis	Esophagus Muscularis	GTEx
rs7589296	CEBPZ	cis	Thyroid	GTEx
rs7589296	CEBPZ	cis	Nerve Tibial	GTEx
rs7589296	CEBPZ	Cis_1M	lymphoblastoid	RTeQTL
rs7589296	CEBPZ	cis	Adipose Subcutaneous	GTEx
rs7589296	PRKD3	cis	lung	GTEx
rs7589296	CEBPZ	cis	Esophagus Muscularis	GTEx
rs7589296	CEBPZ	cis	Esophagus Mucosa	GTEx
rs7589296	RP11-423P10.2	cis	Esophagus Mucosa	GTEx

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:37457000-37461000	Active TSS	H9 Cell Line	embryonic stem cell
2	chr2:37457200-37461000	Active TSS	iPS-15b Cell Line	embryonic stem cell
3	chr2:37459800-37460800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr2:37459800-37461600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
5	chr2:37459800-37461600	Weak transcription	Aorta	Aorta
6	chr2:37459800-37465000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr2:37460000-37461000	Active TSS	iPS-18 Cell Line	embryonic stem cell
8	chr2:37460000-37461200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr2:37460000-37463200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr2:37460000-37463400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:37460000-37468200	Weak transcription	Psoas Muscle	Psoas
12	chr2:37460000-37468600	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr2:37460000-37471200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr2:37460000-37474000	Weak transcription	Colonic Mucosa	Colon
15	chr2:37460000-37495600	Weak transcription	Small Intestine	intestine
16	chr2:37460000-37501600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:37460200-37461200	Weak transcription	Fetal Intestine Small	intestine
18	chr2:37460200-37461200	Weak transcription	Fetal Stomach	stomach
19	chr2:37460200-37461400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr2:37460200-37461800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr2:37460200-37462000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr2:37460200-37462600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr2:37460200-37463800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr2:37460200-37464600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:37460200-37464600	Weak transcription	NHLF	lung
26	chr2:37460200-37465200	Weak transcription	Primary B cells from cord blood	blood
27	chr2:37460200-37466600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr2:37460200-37468400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr2:37460200-37468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr2:37460200-37528600	Weak transcription	Stomach Mucosa	stomach
31	chr2:37460400-37460800	Genic enhancers	HUES64 Cell Line	embryonic stem cell
32	chr2:37460400-37461000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr2:37460400-37461000	Enhancers	Dnd41	blood
34	chr2:37460400-37461200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr2:37460400-37461400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
36	chr2:37460400-37461400	Weak transcription	NHEK	skin
37	chr2:37460400-37461600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr2:37460400-37461600	Weak transcription	K562	blood
39	chr2:37460400-37461800	Weak transcription	Fetal Muscle Leg	muscle
40	chr2:37460400-37461800	Weak transcription	Thymus	Thymus
41	chr2:37460400-37462000	Enhancers	Breast Myoepithelial Primary Cells	Breast
42	chr2:37460400-37462000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr2:37460400-37462000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr2:37460400-37462000	Weak transcription	GM12878-XiMat	blood
45	chr2:37460400-37462200	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr2:37460400-37462200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr2:37460400-37462200	Weak transcription	HSMMtube	muscle
48	chr2:37460400-37462400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr2:37460400-37462400	Weak transcription	HSMM	muscle
50	chr2:37460400-37463200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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