Variant report

Variant	rs758942
Chromosome Location	chr2:210675522-210675523
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10170708	1.00[AMR][1000 genomes]
rs11894334	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12466464	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13424791	1.00[AMR][1000 genomes]
rs1558439	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16843914	1.00[AMR][1000 genomes]
rs16843974	1.00[AMR][1000 genomes]
rs2159745	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41432449	1.00[AMR][1000 genomes]
rs41502644	1.00[AMR][1000 genomes]
rs4673488	1.00[AFR][1000 genomes]
rs6741657	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs7572221	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009129	chr2:210550858-210681136	Bivalent/Poised TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv3142	chr2:210660150-210705006	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:210652200-210685000	Weak transcription	Brain Angular Gyrus	brain
2	chr2:210652400-210681000	Weak transcription	Brain Anterior Caudate	brain
3	chr2:210665800-210681800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:210667600-210678200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:210671400-210681200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr2:210671400-210682400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr2:210674400-210677800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr2:210674400-210677800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:210674400-210682000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:210674400-210685000	Weak transcription	Fetal Brain Female	brain
11	chr2:210674800-210676000	Enhancers	Brain Germinal Matrix	brain
12	chr2:210674800-210678200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr2:210674800-210685000	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:210675200-210675600	Enhancers	Fetal Stomach	stomach

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links