Variant report

Variant	rs7589451
Chromosome Location	chr2:128128775-128128776
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:128126951..128129831-chr2:128134353..128136995,2	K562	blood:
2	chr2:128112442..128114326-chr2:128127386..128129324,2	MCF-7	breast:
3	chr2:128127577..128130278-chr2:128132322..128133910,2	K562	blood:

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:67)

rs_ID	r²[population]
rs10209678	0.81[ASN][1000 genomes]
rs10803585	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10928761	0.94[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11886231	0.87[ASN][1000 genomes]
rs11890187	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11901355	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12052483	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12463451	0.92[ASN][1000 genomes]
rs12465955	0.84[ASN][1000 genomes]
rs12477214	0.96[ASN][1000 genomes]
rs12479003	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12622436	0.83[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12623948	0.82[ASN][1000 genomes]
rs12692064	0.81[ASN][1000 genomes]
rs12989081	0.99[ASN][1000 genomes]
rs12989154	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12991062	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12991768	0.81[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13026597	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13026611	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13029237	0.87[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1566823	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17015199	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1850689	0.99[ASN][1000 genomes]
rs2090574	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2174270	0.84[ASN][1000 genomes]
rs2276583	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.84[ASN][1000 genomes]
rs2896980	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34832797	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35293119	0.82[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs35328149	0.82[ASN][1000 genomes]
rs3768866	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4150407	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.90[ASN][1000 genomes]
rs4150441	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150454	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150477	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4150495	0.87[ASN][1000 genomes]
rs4150496	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4233583	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs4233584	0.92[ASN][1000 genomes]
rs4497825	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs4662575	0.86[ASN][1000 genomes]
rs4662578	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4662580	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4662717	0.81[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4662722	0.96[CEU][hapmap];0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4662725	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55905117	0.85[ASN][1000 genomes]
rs55998967	0.90[ASN][1000 genomes]
rs58475809	0.82[ASN][1000 genomes]
rs59566504	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62157549	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62157555	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62160261	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6430935	0.83[ASN][1000 genomes]
rs6712213	0.82[ASN][1000 genomes]
rs6712446	0.82[ASN][1000 genomes]
rs6712551	0.82[ASN][1000 genomes]
rs6731176	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6732279	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6761447	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7568261	0.99[ASN][1000 genomes]
rs7580658	0.88[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7587639	0.88[EUR][1000 genomes]
rs867304	0.95[ASN][1000 genomes]
rs9636237	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9789510	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:128107800-128140200	Weak transcription	Gastric	stomach
2	chr2:128109800-128134000	Weak transcription	Lung	lung
3	chr2:128120800-128139200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:128120800-128142000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr2:128121200-128135200	Weak transcription	Osteobl	bone
6	chr2:128122200-128142200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr2:128123400-128130400	Weak transcription	Brain Hippocampus Middle	brain
8	chr2:128123400-128131400	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr2:128123400-128135200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr2:128123400-128137600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr2:128123400-128140400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:128123400-128144200	Weak transcription	Colonic Mucosa	Colon
13	chr2:128123600-128128800	Weak transcription	Primary T cells from cord blood	blood
14	chr2:128124000-128140000	Weak transcription	Left Ventricle	heart
15	chr2:128124400-128136200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr2:128124800-128129200	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr2:128125200-128131000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr2:128125400-128131200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr2:128125800-128136400	Weak transcription	Primary T cells fromperipheralblood	blood
20	chr2:128127200-128129000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
21	chr2:128127200-128130000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr2:128127200-128131000	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
23	chr2:128127200-128132000	ZNF genes & repeats	Primary B cells from cord blood	blood
24	chr2:128127200-128135600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr2:128127200-128136000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr2:128127400-128134800	ZNF genes & repeats	Fetal Intestine Small	intestine
27	chr2:128127600-128128800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
28	chr2:128127600-128129000	Enhancers	A549	lung
29	chr2:128127800-128129000	Enhancers	Right Atrium	heart
30	chr2:128127800-128129200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr2:128127800-128129400	Enhancers	HSMMtube	muscle
32	chr2:128128000-128128800	Enhancers	Muscle Satellite Cultured Cells	--
33	chr2:128128000-128129400	Weak transcription	Psoas Muscle	Psoas
34	chr2:128128000-128130200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr2:128128000-128134000	Weak transcription	Ovary	ovary
36	chr2:128128000-128144000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr2:128128000-128144000	Weak transcription	Rectal Smooth Muscle	rectum
38	chr2:128128200-128128800	Enhancers	Skeletal Muscle Female	skeletal muscle
39	chr2:128128200-128129800	Enhancers	Right Ventricle	heart
40	chr2:128128200-128130200	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr2:128128400-128128800	Flanking Active TSS	Adipose Nuclei	Adipose
42	chr2:128128400-128129200	Weak transcription	NHDF-Ad	bronchial
43	chr2:128128400-128129400	Enhancers	HSMM	muscle
44	chr2:128128400-128130000	Enhancers	Fetal Muscle Leg	muscle
45	chr2:128128400-128131000	Weak transcription	Primary T helper cells fromperipheralblood	blood
46	chr2:128128400-128142200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr2:128128600-128129200	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr2:128128600-128129600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr2:128128600-128140000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links