Variant report
Variant | rs7590839 |
---|---|
Chromosome Location | chr2:182602380-182602381 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
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No data |
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Variant related genes | Relation type |
---|---|
ENSG00000260742 | Chromatin interaction |
ENSG00000138434 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10175898 | 0.84[ASN][1000 genomes] |
rs10188644 | 0.84[ASN][1000 genomes] |
rs10497584 | 0.84[ASN][1000 genomes] |
rs12613662 | 0.84[ASN][1000 genomes] |
rs12616753 | 0.80[ASN][1000 genomes] |
rs12616809 | 0.80[ASN][1000 genomes] |
rs12617923 | 0.84[ASN][1000 genomes] |
rs12619962 | 0.84[ASN][1000 genomes] |
rs12623595 | 0.84[ASN][1000 genomes] |
rs1372130 | 0.84[ASN][1000 genomes] |
rs1441158 | 0.84[ASN][1000 genomes] |
rs1441159 | 0.84[ASN][1000 genomes] |
rs16867481 | 0.84[ASN][1000 genomes] |
rs16867483 | 0.84[ASN][1000 genomes] |
rs16867485 | 0.84[ASN][1000 genomes] |
rs16867486 | 0.84[ASN][1000 genomes] |
rs16867489 | 0.84[ASN][1000 genomes] |
rs16867490 | 0.84[ASN][1000 genomes] |
rs16867491 | 0.84[ASN][1000 genomes] |
rs16867492 | 0.84[ASN][1000 genomes] |
rs2583004 | 0.84[ASN][1000 genomes] |
rs2583005 | 0.84[ASN][1000 genomes] |
rs2696332 | 0.80[ASN][1000 genomes] |
rs2696333 | 0.80[ASN][1000 genomes] |
rs2696338 | 0.84[ASN][1000 genomes] |
rs2696340 | 0.84[ASN][1000 genomes] |
rs2696341 | 0.84[ASN][1000 genomes] |
rs2696342 | 0.84[ASN][1000 genomes] |
rs28394061 | 0.84[ASN][1000 genomes] |
rs28464322 | 0.84[ASN][1000 genomes] |
rs28589860 | 0.82[ASN][1000 genomes] |
rs2859677 | 0.84[ASN][1000 genomes] |
rs28654292 | 0.84[ASN][1000 genomes] |
rs28718983 | 0.84[ASN][1000 genomes] |
rs2950649 | 0.84[ASN][1000 genomes] |
rs57227873 | 0.80[ASN][1000 genomes] |
rs58618231 | 0.84[ASN][1000 genomes] |
rs832643 | 0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1005870 | chr2:181968637-182921439 | Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
2 | nsv536063 | chr2:181968637-182921439 | Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 39 gene(s) | inside rSNPs | diseases |
3 | nsv1001558 | chr2:182590009-182732738 | Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive region | 6 gene(s) | inside rSNPs | diseases |
No data |